{
  "paper": "ejdrup-2026-dopamine",
  "layer": {
    "id": "marks",
    "title": "Marked paper",
    "question": "Where, in the document itself, is each claim and each gap?",
    "kind": "step",
    "group": "measures",
    "needs": [
      "adjudication",
      "claim-tree",
      "prepare"
    ],
    "views": [
      "document"
    ]
  },
  "version": 3,
  "versions": [
    {
      "v": 3,
      "ran": "2026-09-12T12:11:27Z",
      "note": "re-marked against the current tree",
      "by": "scripts/pipeline.py run",
      "kind": "step",
      "cmd": "cd extract && python3 -m elife_extract.cli mark --paper ejdrup-2026-dopamine --mapping ../mappings/ejdrup-2026-dopamine.json -o ../marked/ejdrup-2026-dopamine.marked.md",
      "layer": "marks"
    },
    {
      "v": 2,
      "ran": "2026-09-11T19:41:16Z",
      "note": "marks from the re-validated verdicts",
      "by": "scripts/pipeline.py run",
      "kind": "step",
      "cmd": "cd extract && python3 -m elife_extract.cli mark --paper ejdrup-2026-dopamine --mapping ../mappings/ejdrup-2026-dopamine.json -o ../marked/ejdrup-2026-dopamine.marked.md",
      "layer": "marks"
    },
    {
      "v": 1,
      "ran": "2026-09-11T16:40:38Z",
      "note": "marks from the adjudicated verdicts",
      "by": "scripts/pipeline.py run",
      "kind": "step",
      "cmd": "cd extract && python3 -m elife_extract.cli mark --paper ejdrup-2026-dopamine --mapping ../mappings/ejdrup-2026-dopamine.json -o ../marked/ejdrup-2026-dopamine.marked.md",
      "layer": "marks"
    }
  ],
  "state": "stale",
  "ran": "2026-09-12T12:11:27Z",
  "by": "scripts/pipeline.py run",
  "note": "re-marked against the current tree",
  "moved": [
    "claims/ejdrup-2026-dopamine/d1r-tracks-da-50ms-delay.md",
    "claims/ejdrup-2026-dopamine/d2r-initialization-unjustified.md",
    "claims/ejdrup-2026-dopamine/d2r-insensitive-to-brief-pauses.md",
    "claims/ejdrup-2026-dopamine/d2r-integrates-over-seconds.md",
    "claims/ejdrup-2026-dopamine/d2r-occupancy-higher-in-vs.md",
    "claims/ejdrup-2026-dopamine/dat-clustering-greater-in-vs.md",
    "claims/ejdrup-2026-dopamine/dat-immunostaining-dorsoventral-gradient.md",
    "claims/ejdrup-2026-dopamine/dat-nanoclustering-slows-clearance.md",
    "claims/ejdrup-2026-dopamine/ds-lacks-pervasive-tonic-da.md",
    "claims/ejdrup-2026-dopamine/ds-vs-vmax-ratio-assumed.md",
    "claims/ejdrup-2026-dopamine/fscv-matches-may-wightman-1989.md",
    "claims/ejdrup-2026-dopamine/hypothesis-d1-d2-temporal-distinction.md",
    "claims/ejdrup-2026-dopamine/hypothesis-nanoclustering-regulates-vmax.md",
    "claims/ejdrup-2026-dopamine/hypothesis-vmax-explains-regional-difference.md",
    "claims/ejdrup-2026-dopamine/interprets-cragg-rice-vmax-ratio.md",
    "claims/ejdrup-2026-dopamine/interprets-may-wightman-1989-fscv.md",
    "claims/ejdrup-2026-dopamine/low-burst-no-spillover-high-burst-does.md",
    "claims/ejdrup-2026-dopamine/nanoclustering-constant-vmax-constraint.md",
    "claims/ejdrup-2026-dopamine/nanoclustering-model-varicosity-scale.md",
    "claims/ejdrup-2026-dopamine/vmat2-gradient-absent.md",
    "claims/ejdrup-2026-dopamine/vmax-modulation-larger-impact-in-vs.md",
    "claims/ejdrup-2026-dopamine/vmax-only-parameter-driving-regional-difference.md",
    "claims/ejdrup-2026-dopamine/vs-low-active-fraction-resembles-ds-distribution.md",
    "claims/ejdrup-2026-dopamine/vs-lowest-percentiles-above-10nm.md",
    "claims/ejdrup-2026-dopamine/vs-maintains-pervasive-tonic-da.md",
    "runs/ejdrup-2026-dopamine/prepared.json"
  ],
  "lost": null,
  "blocked_by": null,
  "unrecorded_upstream": null,
  "produces": [
    "marked/ejdrup-2026-dopamine.marked.md"
  ],
  "command": "cd extract && python3 -m claim_graphs.cli mark --paper ejdrup-2026-dopamine --mapping ../mappings/ejdrup-2026-dopamine.json -o ../marked/ejdrup-2026-dopamine.marked.md",
  "href": "/elife-claim-trees/papers/ejdrup-2026-dopamine/marks/"
}
