{
  "paper": "kolb-2026-igabasnfr2",
  "layer": {
    "id": "marks",
    "title": "Marked paper",
    "question": "Where, in the document itself, is each claim and each gap?",
    "kind": "step",
    "group": "measures",
    "needs": [
      "adjudication",
      "claim-tree",
      "prepare"
    ],
    "views": [
      "document"
    ]
  },
  "version": 4,
  "versions": [
    {
      "v": 4,
      "ran": "2026-09-13T13:49:38Z",
      "note": "ran via scripts/pipeline.py",
      "by": "scripts/pipeline.py run",
      "kind": "step",
      "cmd": "cd extract && python3 -m elife_extract.cli mark --paper kolb-2026-igabasnfr2 --mapping ../mappings/kolb-2026-igabasnfr2.json -o ../marked/kolb-2026-igabasnfr2.marked.md",
      "layer": "marks"
    },
    {
      "v": 3,
      "ran": "2026-09-12T12:11:28Z",
      "note": "re-marked against the current tree",
      "by": "scripts/pipeline.py run",
      "kind": "step",
      "cmd": "cd extract && python3 -m elife_extract.cli mark --paper kolb-2026-igabasnfr2 --mapping ../mappings/kolb-2026-igabasnfr2.json -o ../marked/kolb-2026-igabasnfr2.marked.md",
      "layer": "marks"
    },
    {
      "v": 2,
      "ran": "2026-09-11T19:41:17Z",
      "note": "marks from the re-validated verdicts",
      "by": "scripts/pipeline.py run",
      "kind": "step",
      "cmd": "cd extract && python3 -m elife_extract.cli mark --paper kolb-2026-igabasnfr2 --mapping ../mappings/kolb-2026-igabasnfr2.json -o ../marked/kolb-2026-igabasnfr2.marked.md",
      "layer": "marks"
    },
    {
      "v": 1,
      "ran": "2026-09-11T16:38:51Z",
      "note": "marks from the adjudicated verdicts",
      "by": "scripts/pipeline.py run",
      "kind": "step",
      "cmd": "cd extract && python3 -m elife_extract.cli mark --paper kolb-2026-igabasnfr2 --mapping ../mappings/kolb-2026-igabasnfr2.json -o ../marked/kolb-2026-igabasnfr2.marked.md",
      "layer": "marks"
    }
  ],
  "state": "stale",
  "ran": "2026-09-13T13:49:38Z",
  "by": "scripts/pipeline.py run",
  "note": "ran via scripts/pipeline.py",
  "moved": [
    "mappings/kolb-2026-igabasnfr2.json",
    "claims/kolb-2026-igabasnfr2/crystal-structure-pdb-9d57.md",
    "claims/kolb-2026-igabasnfr2/igabasnfr2-13fold-expression-increase.md",
    "claims/kolb-2026-igabasnfr2/igabasnfr2-fourfold-sensitivity-gain.md",
    "claims/kolb-2026-igabasnfr2/igabasnfr2n-negative-going-variant.md",
    "claims/kolb-2026-igabasnfr2/mutagenesis-3947-variants-screened.md",
    "claims/kolb-2026-igabasnfr2/screening-scope-wet-lab-only.md"
  ],
  "lost": null,
  "blocked_by": null,
  "unrecorded_upstream": null,
  "produces": [
    "marked/kolb-2026-igabasnfr2.marked.md"
  ],
  "command": "cd extract && python3 -m claim_graphs.cli mark --paper kolb-2026-igabasnfr2 --mapping ../mappings/kolb-2026-igabasnfr2.json -o ../marked/kolb-2026-igabasnfr2.marked.md",
  "href": "/elife-claim-trees/papers/kolb-2026-igabasnfr2/marks/"
}