MIRA export

stale · v4 provisional awaiting approval

What does the schema eLife reads carry, and what does it drop?

for A deep learning pipeline for mapping in situ network-level neurovascular coupling in multi-photon fluorescence microscopy · this layer across all papers · json

Provisional

This layer needs a corpus-scope decision that has not been ruled on yet, so what it produces would change if the decision changed. It waits on claim-format, relation-vocab.

Awaiting approval

Waiting for approval. That is a statement about the record, not about whether anyone has read this: people read the corpus without stamping what they read, and only a stamp leaves a trace. Approval is an operation on a version, not a step of its own — it is recorded against the version it was granted to, so running this layer again does not carry it forward.

What it produced

Read from exports/rozak-2026-neurovascular-dl.mira.jsonld · 97 KB.

Nothing on this page renders graph or table for this file yet — the link above is the artifact itself.

How it is defined

What this layer reads besides its dependencies. Each is a declared input: its content is hashed into every run, so editing one makes those runs stale.

scripts/export_mira.pythe script that runs itnot in the repository

The declaration names this path and the repository does not have it. An input that does not exist hashes to nothing, so it cannot make a run stale — the layer is declared to depend on something it is not in fact tracking.

Artifacts

Versions

From the run ledger. There is no changelog beside it to keep in step.

  1. v4 · 2026-09-13 · scripts/pipeline.py run

    ran via scripts/pipeline.py

    python3 scripts/export_mira.py rozak-2026-neurovascular-dl

  2. v3 · 2026-09-11 · scripts/pipeline.py run

    export timestamps derived from claim registration dates

    python3 scripts/export_mira.py rozak-2026-neurovascular-dl

  3. v2 · 2026-09-11 · scripts/pipeline.py run

    relation vocabulary consolidated into scripts/relations.py (#30)

    python3 scripts/export_mira.py rozak-2026-neurovascular-dl

  4. v1 · 2026-09-10 · unrecorded backfilled from the artifact

    backfilled from the artifact on disk

This layer across the corpus

Across the corpus

10 stale·a paper links to its own cell, where this layer's output for it is rendered

PaperStateVersionLast runOutputCell
A three-dimensional immunofluorescence atlas of the …export timestamps derived from claim registration datesstalev32026-09-11artiushin-2026-spider-atlas.gap-report.mdjson
Distinct representational properties of cues and con…export timestamps derived from claim registration datesstalev32026-09-11bouyeure-2026-fear-rsa.gap-report.mdjson
Computational modelling identifies key determinants …export timestamps derived from claim registration datesstalev32026-09-11ejdrup-2026-dopamine.gap-report.mdjson
Contributions of insula and superior temporal sulcus…rebuild after edge completion passstalev82026-09-13gadeke-2026-guilt-insula.gap-report.mdjson
Spatially targeted inhibitory rhythms differentially…export timestamps derived from claim registration datesstalev32026-09-11headley-2026-inhibitory-rhythms.gap-report.mdjson
Feedback of peripheral saccade targets to early fove…export timestamps derived from claim registration datesstalev32026-09-11kammer-2026-foveal-feedback.gap-report.mdjson
iGABASnFR2 is an improved genetically encoded protei…ran via scripts/pipeline.pystalev42026-09-13kolb-2026-igabasnfr2.gap-report.mdjson
A deep learning pipeline for mapping in situ network…ran via scripts/pipeline.pystalev42026-09-13rozak-2026-neurovascular-dl.gap-report.mdjson
Self-association enhances early attentional selectio…export timestamps derived from claim registration datesstalev32026-09-11scheller-2026-self-prioritization.gap-report.mdjson
Impaired excitability of fast-spiking neurons in a n…export timestamps derived from claim registration datesstalev32026-09-11wengert-2026-kcnc1.gap-report.mdjson

Inputs and outputs

Reads, besides its dependencies
  • scripts/export_mira.py · declared, and not in the repository — it hashes to nothing, so it cannot make a run stale
Produces
  • exports/{paper}.mira.jsonld
  • exports/{paper}.mira-extended.jsonld
  • exports/{paper}.gap-report.md

One per paper — the table above links each one that exists.

Views
  • graph — on the paper page, as the claim graph
  • table — declared, and this artifact is not the shape this view needs

Running it

The command comes from the declaration, so this text and what actually runs cannot diverge. pipeline.py run also runs the unmet dependencies first. 

python3 scripts/pipeline.py run <paper> mira-export

Underneath, that runs python3 scripts/export_mira.py {paper}.