Coverage

blocked upstream · v3 provisional awaiting approval

What does the paper assert that no claim represents?

for A three-dimensional immunofluorescence atlas of the brain of the hackled-orb weaver spider, Uloborus diversus · this layer across all papers · json

Provisional

This layer needs a corpus-scope decision that has not been ruled on yet, so what it produces would change if the decision changed. It waits on claim-format, relation-vocab.

Awaiting approval

Waiting for approval. That is a statement about the record, not about whether anyone has read this: people read the corpus without stamping what they read, and only a stamp leaves a trace. Approval is an operation on a version, not a step of its own — it is recorded against the version it was granted to, so running this layer again does not carry it forward.

What it produced128 spans.orphans

Read from coverage/artiushin-2026-spider-atlas.json · 46 KB. claims 17panels.pct 14statistics.total 0statistics.pct 100spans.segmented 582spans.obligations 202spans.textual 380spans.accounted 74spans.pct 36.6

#	uid	section	text	stats	panels
1	results-002	results	Residing within the prosoma, the central nervous system, or synganglion, as it has been called ( Steinhoff et al., 2017 ), is comprised of two major divisions named in reference to the esophageal pass…	`[]`	`["fig1a"]`
2	results-004	results	Consistent with general arthropod nervous system morphology, the neuronal somata are found superficially ( Figure 1B ), while the internal structure of the brain is comprised primarily of neuropil.	`[]`	`["fig1b"]`
3	results-006	results	( A ) 3D rendering of U. diversus (female) synganglion from averaged α-synapsin volume, composed of 909 z -planes, oblique posterior–lateral (left) and oblique anterior–lateral (right) views.	`[]`	`["fig1a"]`
4	results-007	results	( B ) 3D rendering of α-synapsin (green) and DAPI stained (blue) synganglion, posterior, lateral, and anterior views.	`[]`	`["fig1b"]`
5	results-025	results	( A ) 3D rendering of leg neuropils as annotated from averaged synapsin volume with posterior oblique, anterior oblique, and dorsal views, left to right.	`[]`	`["fig2a"]`
6	results-026	results	( B ) Maximum intensity projections of z -planes 160–190 for leg neuropil expression of synapsin (α-synapsin, gray), ( i ) serotonergic (α-5-HT, green), (ii) octopaminergic/tyraminergic (α-TDC2, magen…	`[]`	`["fig2b"]`
7	results-027	results	Dotted perimeter marks the boundary of Leg Neuropil 1. ( C ) Maximum intensity projections of z -planes 230–260. Dotted perimeter marks the boundary of Leg Neuropil 1. ( D ) Maximum intensity projecti…	`[]`	`["fig2c","fig2d"]`
8	results-034	results	Dopaminergic signal (anti-TH) is more expansive, evenly filling each LN with a mesh-like network of TH+ varicosities ( Figure 2D ).	`[]`	`["fig2d"]`
9	results-041	results	CCAP immunoreactivity within the LNs is predominantly in the posterior halves, where sparse puncta are evenly distributed ( Figure 2B, Cvi ).	`[]`	`["fig2b"]`
10	results-042	results	FMRFamide immunoreactivity is also evident in the LNs ( Figure 2B, Cv ).	`[]`	`["fig2b"]`
11	results-043	results	Opisthosomal neuropil The OpN is found at the posterior and dorsal-most extension of the subesophageal mass ( Figure 3A ; Figure 3—videos 1–3 ).	`[]`	`["fig3a","fig3"]`
12	results-045	results	Within the OpN, there are a number of antero-posterior longitudinal tracts, while a ladder-like appearance of medio-laterally running tracts in the ⍺-synapsin channel can also be observed ( Figure 3B,…	`[]`	`["fig3b","fig3c"]`
13	results-046	results	Posteriorly traveling tracts also diverge laterally to follow the circumference of the OpN ( Figure 3B–D ).	`[]`	`["fig3b","fig3c","fig3d"]`
14	results-047	results	Figure 3. Opisthosomal neuropil.	`[]`	`["fig3"]`
15	results-048	results	( A ) 3D rendering of the opisthosomal neuropil as annotated from averaged synapsin volume with posterior oblique, anterior oblique, and dorsal views, left to right.	`[]`	`["fig3a"]`
16	results-049	results	( B ) Maximum intensity projections of z -planes 415–425 for opisthosomal neuropil expression of synapsin (α-synapsin, gray), ( i ) serotonergic (α-5-HT, green), (ii) octopaminergic/tyraminergic (α-TD…	`[]`	`["fig3b"]`
17	results-052	results	( C ) Maximum intensity projections of z -planes 448–465. Longitudinal and lateral projections form a ladder-like structure in the α-TDC2 subpanel (brace).	`[]`	`["fig3c"]`
18	results-054	results	( D ) Maximum intensity projection showing dopaminergic (α-TH, green) immunoreactivity in the opisthosomal neuropil.	`[]`	`["fig3d"]`
19	results-056	results	Figure 3—video 1. Opisthosomal 3D volume.	`[]`	`["fig3"]`
20	results-057	results	Figure 3—video 2. Neurotransmitter immunostains in the opisthosomal neuropil.	`[]`	`["fig3"]`
21	results-058	results	Figure 3—video 3. Neuropeptide immunostains in the opisthosomal neuropil.	`[]`	`["fig3"]`
22	results-061	results	The lateral perimeter tracts are likewise revealed by ChAT and proctolin immunoreactivity ( Figure 3B, Ciii, iv ) as well as by fibers from dopaminergic populations (anti-TH) ( Figure 3D ).	`[]`	`["fig3b","fig3d"]`
23	results-065	results	Intense boutons line a tract running parallel to the midline, while also giving rise dorsally and laterally to a ladder-like structure of projections in the anterior–posterior direction, which can bes…	`[]`	`["fig3d"]`
24	results-067	results	Ample FMRFamide signal is seen within the opisthosomal neuromere, but its signal is more uniform than the other targets investigated ( Figure 3B, Cv ).	`[]`	`["fig3b"]`
25	results-068	results	Pedipalpal neuropil As the LNs begin to diminish in the dorsal region of the subesophageal mass, a smaller antero-lateral synaptic density becomes apparent, representing the pedipalpal neuropil (PdN) …	`[]`	`["fig4a","fig4"]`
26	results-074	results	Figure 4. Pedipalp, Blumenthal, and cheliceral neuropil.	`[]`	`["fig4"]`
27	results-075	results	( A ) 3D rendering of the pedipalp neuropil as annotated from averaged synapsin volume with posterior oblique and anterior oblique views, left to right, and dorsal view, lower.	`[]`	`["fig4a"]`
28	results-076	results	( B ) Optical slices (z275) from the standard brain, containing a cross-section of the pedipalp neuropil (dashed line boundary), with expression of (i) synapsin (α-synapsin, gray), (ii) octopaminergic…	`[]`	`["fig4b"]`
29	results-078	results	( C ) Optical slices (z360) from the standard brain, with a cropped and enlarged selection showing the Blumenthal neuropil (brace), with expression of (i) synapsin (α-synapsin, gray) and proctolin (α-…	`[]`	`["fig4c"]`
30	results-080	results	( D ) 3D rendering of the cheliceral neuropil as annotated from averaged synapsin volume with posterior oblique and anterior oblique views, left to right, and dorsal view, lower.	`[]`	`["fig4d"]`
31	results-081	results	( E ) Optical slices (z400) from the standard brain, containing a cross-section of the cheliceral neuropil (dashed line boundary), with expression of (i) synapsin (α-synapsin, gray), (ii) octopaminerg…	`[]`	`["fig4e"]`
32	results-084	results	Figure 4—video 1. Pedipalp neuropil 3D volume.	`[]`	`["fig4"]`
33	results-085	results	Figure 4—video 2. Neurotransmitter and neuropeptide immunostains in the pedipalp neuropil.	`[]`	`["fig4"]`
34	results-086	results	Figure 4—video 3. Cheliceral 3D volume.	`[]`	`["fig4"]`
35	results-087	results	Figure 4—video 4. Neurotransmitter immunostains in the cheliceral neuropil.	`[]`	`["fig4"]`
36	results-088	results	Figure 4—video 5. Neuropeptide immunostains in the cheliceral neuropil.	`[]`	`["fig4"]`
37	results-089	results	Figure 4—video 6. Immunostains for α-synapsin and α-proctolin in the blumenthal neuropil.	`[]`	`["fig4"]`
38	results-091	results	Although we also see a paired, synapsin-dense entity close to the midline ( Figure 4C – brace), in the approximate anterio-ventral subesophageal location as described for C. salei , we cannot be certa…	`[]`	`["fig4c"]`
39	results-093	results	In dorsal planes, this immunoreactivity morphs into laterally moving tracts Figure 4—video 6 , becoming difficult to trace.	`[]`	`["fig4"]`
40	results-095	results	Deutocerebral features Cheliceral neuropil At the level of the esophageal passage, an anterior–lateral neuropil begins, wrapping medially to become the ChN ( Figure 4D ; Figure 4—videos 3–5 ).	`[]`	`["fig4d","fig4"]`
41	results-103	results	Supraesophageal (Protocerebral) neuropils Ventral features The supraesophageal mass begins dorsally to the closure of the esophageal passage, and in its ventral-most planes, can be subdivided anterior…	`[]`	`["fig5a","fig5b","fig5c"]`
42	results-106	results	Figure 5. Ventral supraesophageal features.	`[]`	`["fig5"]`
43	results-107	results	Posterior and anterior stalk region expression of synapsin (α-synapsin, gray), ( i ) serotonergic (α-5-HT, green), (ii) cholinergic (α-ChAT, cyan), (iii) octopaminergic/tyraminergic (α-TDC2, magenta),…	`[]`	`["fig5a"]`
44	results-110	results	( B ) z -plane 490. Further ventrally, a bridging structure is also visible on the posterior end of the ventral supraesophageal, as seen in the α-Proctolin subpanel (brace).	`[]`	`["fig5b"]`
45	results-113	results	( C ) z -plane 511. Arrowhead in the α-ChAT subpanel marks prominent cholinergic immunoreactivity in the PCT, more clearly visible at this plane.	`[]`	`["fig5c"]`
46	results-117	results	Figure 5—video 1. Neurotransmitter Immunostains in the Ventral Supraesophageal Ganglion.	`[]`	`["fig5"]`
47	results-118	results	Figure 5—video 2. Neuropeptide immunostains in the ventral supraesophageal ganglion.	`[]`	`["fig5"]`
48	results-119	results	The esophageal passage is bridged at the anterior side by a region named the stomodeal bridge (StB) ( Steinhoff et al., 2017 ; Figure 5A – brace).	`[]`	`["fig5a"]`
49	results-120	results	A bridge structure also exists at the posterior end, where additional undifferentiated synaptic density is flanking ( Figure 5B – brace with asterisk).	`[]`	`["fig5b"]`
50	results-121	results	Within these planes, a protocerebral tract (PCT) is essentially parallel to the ventro-dorsal axis and appears as twin, dense nodes rising in the central burgeoning protocerebrum ( Figure 5B, C ). 5-H…	`[]`	`["fig5b","fig5c","fig5"]`
51	results-122	results	TDC2 immunoreactivity is prominent in the StB and adjacent areas, and at this plane, two lateral bands of immunoreactivity appear which do not correspond to a clear demarcation in the synapsin channel…	`[]`	`["fig5"]`
52	results-124	results	Concentrations of TDC2+ immunoreactivity are also apparent centrally, both anterior and lateral to the PCTs ( Figure 5Ciii – arrows, Figure 5—video 1 ).	`[]`	`["fig5"]`
53	results-125	results	Similar to what has been described for M. muscosa as the StB ( Steinhoff et al., 2017 ), the area adjacent to the esophagus on the anterior side has immunoreactivity to allatostatin A, although the ac…	`[]`	`["fig5"]`
54	results-127	results	The posterior region adjacent to the midline, previously highlighted with 5HT immunoreactivity, also shows partial AstA+ innervation, displaying a unique oxbow type pattern ( Figure 5Cv – arrow, Figur…	`[]`	`["fig5"]`
55	results-132	results	There is also proctolin immunoreactivity seen centrally, medial to where the PCT is ascending ( Figure 5B, Civ ).	`[]`	`["fig5b"]`
56	results-133	results	ChAT+ immunoreactivity is diffusely present throughout the stalk regions ( Figure 5Cii ), and unlike the other antisera, co-stains the posterior aspect of the PCT, which is prominently visible with sy…	`[]`	`["fig5b"]`
57	results-134	results	Hagstone neuropil and mid-supraesophageal features We will define the hagstone neuropil as a central, midline adjacent, paired structure, whose ventral bounds share the same plane as the appearance of…	`["z = 540","z = 615"]`	`[]`
58	results-135	results	This approximately kidney-bean-shaped structure is pierced by a circular spot lacking synapsin immunoreactivity ( Figure 6A, C, D – dashed outline, Figure 6—videos 1–3 ) – which may be indicative of a…	`[]`	`["fig6a","fig6c","fig6d","fig6"]`
59	results-136	results	Figure 6. Hagstone neuropil and mid-supraesophageal features.	`[]`	`["fig6"]`
60	results-137	results	( A ) 3D rendering of the hagstone neuropil as annotated from averaged synapsin volume with posterior oblique, anterior oblique, and dorsal views, top to bottom.	`[]`	`["fig6a"]`
61	results-138	results	( B–D ) Hagstone neuropil and posterior feature expression of synapsin (α-synapsin, gray), ( i ) serotonergic (α-5-HT, green), (ii) proctolin (α-Proctolin, yellow), (iii) octopaminergic/tyraminergic (…	`[]`	`["fig6b","fig6c","fig6d"]`
62	results-139	results	( C ) z -planes 565, with the boundary of hagstone neuropil (dashed perimeter).	`[]`	`["fig6c"]`
63	results-141	results	( D ) z -plane 585, with the boundary of hagstone neuropil (dashed perimeter).	`[]`	`["fig6d"]`
64	results-145	results	Figure 6—video 1. Hagstone 3D volume.	`[]`	`["fig6"]`
65	results-146	results	Figure 6—video 2. Neurotransmitter immunostains in the hagstone neuropil.	`[]`	`["fig6"]`
66	results-147	results	Figure 6—video 3. Neuropeptide immunostains in the hagstone neuropil.	`[]`	`["fig6"]`
67	results-150	results	The semi-circular tracts bend medially ( Figure 6Bi ), before a fusion of seemingly all three directions is seen immediately dorsal ( Figure 6C ).	`[]`	`["fig6c"]`
68	results-151	results	The hagstone neuropil is essentially completely filled with serotonergic immunoreactivity, matching the outline defined in the anti-synapsin channel ( Figure 6C, Di ).	`[]`	`["fig6c"]`
69	results-152	results	On the posterior end is a diffuse, arching band of varicosities, with fiber tracts at the midline, resembling an umbrella-like form ( Figure 6C, Di – brace, anti-5-HT).	`[]`	`["fig6c"]`
70	results-154	results	TDC2 immunoreactivity is also present in the umbrella-like posterior region innervated by 5-HT ( Figure 6Ciii – brace, Figure 6—video 2 ), and sparser puncta within the bounds of the hagstone neuropil…	`[]`	`["fig6"]`
71	results-165	results	( C ) Optical sections of the supraesophageal ganglion from an averaged α-synapsin volume (ventral (top) to dorsal (bottom)).	`[]`	`["fig7c"]`
72	results-167	results	( D ) α-βTubulin3 (magenta) immunoreactivity aligned with α-Synapsin volume (gray) (compare to bottom portion of previous subfigure) showing the arching form of the mid-line spanning MB bridge.	`[]`	`["fig7d"]`
73	results-169	results	( F ) α-βTubulin3 (magenta) and α-Synapsin (green) immunoreactivity in the supraesophageal ganglion at the plane where the MB hafts appear (round, intensely immunoreactive).	`[]`	`["fig7f"]`
74	results-171	results	( G ) Tripart tract entering at the MB head to fuse with the tract descending through the MB.	`[]`	`["fig7g"]`
75	results-177	results	Synapsin immunoreactivity is modest within the bridge region, whose true thickness is better visualized with staining for βTubulin3 ( Figure 7D ).	`[]`	`["fig7d"]`
76	results-182	results	Although difficult to trace the source, it appears the hafts are innervated from the posterior side ( Figure 7F – arrows).	`[]`	`["fig7f"]`
77	results-183	results	By βTubulin3 immunoreactivity, we observe two tracts which straddle the MB hafts as they descend from the dorsal somata layer ( Figure 7G ).	`[]`	`["fig7g"]`
78	results-192	results	By βTubulin3 staining, we also observed a trident of tracts feeding into the dorsal aspect of the MB head ( Figure 7G ).	`[]`	`["fig7g"]`
79	results-201	results	The optic neuropils in U. diversus tended to show weaker synapsin immunoreactivity but were clearly seen with antisera to HRP ( Figure 8A ).	`[]`	`["fig8a"]`
80	results-202	results	Figure 8. Visual pathways.	`[]`	`["fig8"]`
81	results-203	results	( A ) Immunostaining for α-HRP (magenta) for neuropil and use of DAPI (blue) for nuclei, arrows show the primary (1°) and secondary (2°) visual pathway extensions from the bulk of the supraesophageal …	`[]`	`["fig8a"]`
82	results-204	results	( B ) 3D renderings of synapsin immunoreactivity in the dorsal supraesophageal ganglion, with tissue of the primary (1°) and secondary (2°) visual pathway visible.	`[]`	`["fig8b"]`
83	results-207	results	As in other species, the secondary pathway is larger ( Figure 8B ), lifting away anteriodorsally from the zone of the MB heads.	`[]`	`["fig8b"]`
84	results-208	results	This continuity can be seen from the sliced three-dimensional maximum intensity projection of synapsin ( Figure 8B – brace).	`[]`	`["fig8b"]`
85	results-209	results	The primary pathway is diminutive in U. diversus and emerges as a bulbous shape at the dorsal-most end of the brain through a field of somata ( Figure 8A ).	`[]`	`["fig8a"]`
86	results-217	results	Between the two halves, at the midline, is a furrow which is negative for synapsin immunoreactivity, giving this neuropil, in conjunction with the synapsin-negative zone, a likeness to tonsils when vi…	`[]`	`["fig9a","fig9c","fig9"]`
87	results-218	results	Figure 9. Tonsillar neuropil.	`[]`	`["fig9"]`
88	results-219	results	( A ) 3D rendering of tonsillar neuropil as annotated from averaged synapsin volume with posterior oblique, anterior oblique, and dorsal views, left to right.	`[]`	`["fig9a"]`
89	results-220	results	( B ) Oblique horizontal optical section of supraesophageal ganglion with α-Synapsin (green) and α-βTubulin3 (magenta) immunoreactivity.	`[]`	`["fig9b"]`
90	results-222	results	( C ) Ventral (z682) and dorsal (z700) views of the tonsillar neuropil, demarcated by dashed lines, from the standard brain, showing expression of synapsin (gray), (i, vi) serotonergic (α-5-HT, green)…	`[]`	`["fig9c"]`
91	results-224	results	Figure 9—video 1. Tonsillar neuropil 3D volume.	`[]`	`["fig9"]`
92	results-225	results	Figure 9—video 2. Neurotransmitter immunostains in the tonsillar neuropil.	`[]`	`["fig9"]`
93	results-226	results	Figure 9—video 3. Neuropeptide immunostains in the tonsillar neuropil.	`[]`	`["fig9"]`
94	results-228	results	By tubulin immunoreactivity, it appears to bifurcate the structure below the bridge in the dorsal portion ( Figure 9B ).	`[]`	`["fig9b"]`
95	results-229	results	A subset of antisera for specific neuronal populations is instrumental in confirming this neuropil, as their immunoreactivity is circumscribed by its boundaries, with little neighboring signal to obsc…	`[]`	`["fig9c"]`
96	results-236	results	This is the dorsal-most neuropil seen in the interior of the protocerebrum before reaching the dense cap of somata ( Figure 10 ; Figure 10—videos 1–3 ).	`[]`	`["fig10"]`
97	results-237	results	Figure 10. Protocerebral bridge (PCB) neuropil.	`[]`	`["fig10"]`
98	results-238	results	( A ) 3D rendering of PCB neuropil as annotated from averaged synapsin volume, with posterior oblique, anterior oblique, and dorsal views, left to right.	`[]`	`["fig10a"]`
99	results-239	results	( B ) Ventral (z722) and dorsal (z730) views of the PCB, as demarcated by dashed lines, from the standard brain, showing expression of synapsin (gray), (i, vi) GABAergic (α-GAD, red), (ii, vii) octopa…	`[]`	`["fig10b"]`
100	results-242	results	Figure 10—video 1. Protocerebral bridge 3D volume.	`[]`	`["fig10"]`
101	results-243	results	Figure 10—video 2. Neurotransmitter immunostains in the protocerebral bridge.	`[]`	`["fig10"]`
102	results-244	results	Figure 10—video 3. Neuropeptide immunostains in the protocerebral bridge.	`[]`	`["fig10"]`
103	results-253	results	We refer to this as the dorsal protocerebral commissure ( Figure 10B – arrows) and the neuronal subtype populations which show PCB expression tend to also innervate this commissure.	`[]`	`["fig10b"]`
104	results-254	results	The strongest of these are octopaminergic/tyraminergic neurons (anti-TDC2) and proctolin+ neurons (anti-proctolin) ( Figure 10B – α-TDC2, α-proctolin).	`[]`	`["fig10b"]`
105	results-256	results	A similar pattern is also seen for allatostatin A ( Figure 10B – α-AstA).	`[]`	`["fig10b"]`
106	results-257	results	Cholinergic immunoreactivity is also apparent in the posterior arch, but is more subtle and in a single layer in the anterior domain, less comparable to that of TDC2, proctolin, and allatostatin A. Ar…	`[]`	`["fig10a","fig10b"]`
107	results-262	results	( A ) 3D rendering of arcuate body neuropil as annotated from averaged α-synapsin volume, posterior oblique, posterior, and anterior oblique views, left to right, respectively ( B ) Individual 3D rend…	`[]`	`["fig11a","fig11b"]`
108	results-268	results	( E ) α-βTubulin3 (magenta) and α-Synapsin (green) immunoreactivity in the arcuate body (ventral to dorsal as top to bottom, respectively), with arrows marking where pronounced fiber tracts pass throu…	`[]`	`["fig11e"]`
109	results-269	results	( F ) Dorsal view of arcuate body showing layering in ABv and ABd (brace), for proctolin (α-Proctolin, yellow) and octopaminergic/tyraminergic (α-TDC2, magenta) immunoreactivity which have overlapping…	`[]`	`["fig11f"]`
110	results-270	results	( G ) Arrowheads marking patterning of individual units of α-AstA immunoreactivity in the arcuate body, suggestive of a columnar structure.	`[]`	`["fig11g"]`
111	results-296	results	Neurons of the PCL send their projections anteriorly through the ventral arcuate layers, as revealed by immunostaining for βTubulin3 in conjunction with synapsin ( Figure 11E ).	`[]`	`["fig11e"]`
112	results-300	results	An example is the dorsal arcuate body (ABd), where TDC2 immunoreactivity shows a prominent columnar, flagstone innervation, while proctolin has a sparse field of fine puncta in the same layer ( Figure…	`[]`	`["fig11f"]`
113	results-302	results	For example, a series of discernible units of allatostatin A+ immunoreactivity are seen in the posABv layer, suggesting the columnar organization which is present, but generally obscured by the densit…	`[]`	`["fig11g"]`
114	discussion-005	discussion	Given the utility of specific stains for understanding of neuropil structures ( Figure 13 , Figure 13—video 1 ), tracts, and other features, this atlas provides a rich source for comparative anatomy i…	`[]`	`["fig13"]`
115	discussion-006	discussion	Figure 13. Summary of U . diversus neuropils.	`[]`	`["fig13"]`
116	discussion-007	discussion	( A ) Posterior oblique, dorsal, and anterior oblique views of 3D renderings of the standard U. diversus brain with annotations of major established and novel neuropils throughout the subesophageal an…	`[]`	`["fig13a"]`
117	discussion-008	discussion	( B ) 3D renderings of the standard U. diversus brain with annotations of potential central complex constituents in shades of green (protocerebral bridge, arcuate body ventral and dorsal lobes, tonsil…	`[]`	`["fig13b"]`
118	discussion-009	discussion	( C ) 3D neuropil renderings from neuropils of the central complex as found in the insects Rhyparabia maderae , Scarabaeus lamarcki , and Manduca sexta (images from https://insectbraindb.org/app/ ).	`[]`	`["fig13c"]`
119	discussion-011	discussion	Figure 13—video 1. 3D rendering of all identified brain regions.	`[]`	`["fig13"]`
120	discussion-081	discussion	Based on gross morphology, it is tempting to speculate that these novel neuropils, when considered along with each individual lobe of the arcuate body, may form an equivalent to a central complex in U…	`[]`	`["fig13"]`
121	captions-010	captions	[panels detected: a, b, c, d] === Figure 3 === Figure 3. Opisthosomal neuropil.	`[]`	`["fig3"]`
122	captions-019	captions	[panels detected: a, b, c, d] === Figure 4 === Figure 4. Pedipalp, Blumenthal, and cheliceral neuropil.	`[]`	`["fig4"]`
123	captions-029	captions	[panels detected: a, b, c, d, e] === Figure 5 === Figure 5. Ventral supraesophageal features.	`[]`	`["fig5"]`
124	captions-040	captions	[panels detected: a, b, c] === Figure 6 === Figure 6. Hagstone neuropil and mid-supraesophageal features.	`[]`	`["fig6"]`
125	captions-062	captions	[panels detected: a, b, c, d, e, f, g, h, i] === Figure 8 === Figure 8. Visual pathways.	`[]`	`["fig8"]`
126	captions-067	captions	[panels detected: a, b] === Figure 9 === Figure 9. Tonsillar neuropil.	`[]`	`["fig9"]`
127	captions-073	captions	[panels detected: a, b, c] === Figure 10 === Figure 10. Protocerebral bridge (PCB) neuropil.	`[]`	`["fig10"]`
128	captions-105	captions	Compass abbreviations: A = anterior, P = posterior, D = dorsal, V = ventral, L = left, R = right. === Figure 13 === Figure 13. Summary of U . diversus neuropils.	`[]`	`["fig13"]`

Artifacts

coverage/artiushin-2026-spider-atlas.json

Versions

From the run ledger. There is no changelog beside it to keep in step.

v3 · 2026-09-13 · scripts/pipeline.py run

ran via scripts/pipeline.py

cd extract && python3 -m elife_extract.cli coverage --paper artiushin-2026-spider-atlas --json ../coverage/artiushin-2026-spider-atlas.json
v2 · 2026-09-12 · scripts/pipeline.py run

re-run after prepare v2

cd extract && python3 -m elife_extract.cli coverage --paper artiushin-2026-spider-atlas --json ../coverage/artiushin-2026-spider-atlas.json
v1 · 2026-09-11 · scripts/pipeline.py run

coverage for the nine papers that had none

cd extract && python3 -m elife_extract.cli coverage --paper artiushin-2026-spider-atlas --json ../coverage/artiushin-2026-spider-atlas.json

This layer across the corpus

Across the corpus

4 blocked upstream · 6 stale·a paper links to its own cell, where this layer's output for it is rendered

Paper	State	Version	Last run	Output	Cell
A three-dimensional immunofluorescence atlas of the …ran via scripts/pipeline.py	blocked upstream	v3	2026-09-13	artiushin-2026-spider-atlas.json	json
Distinct representational properties of cues and con…ran via scripts/pipeline.py	stale	v4	2026-09-13	bouyeure-2026-fear-rsa.json	json
Computational modelling identifies key determinants …ran via scripts/pipeline.py	stale	v3	2026-09-13	ejdrup-2026-dopamine.json	json
Contributions of insula and superior temporal sulcus…rebuild after edge completion pass	stale	v7	2026-09-13	gadeke-2026-guilt-insula.json	json
Spatially targeted inhibitory rhythms differentially…ran via scripts/pipeline.py	stale	v3	2026-09-13	headley-2026-inhibitory-rhythms.json	json
Feedback of peripheral saccade targets to early fove…ran via scripts/pipeline.py	blocked upstream	v3	2026-09-13	kammer-2026-foveal-feedback.json	json
iGABASnFR2 is an improved genetically encoded protei…ran via scripts/pipeline.py	blocked upstream	v5	2026-09-13	kolb-2026-igabasnfr2.json	json
A deep learning pipeline for mapping in situ network…ran via scripts/pipeline.py	blocked upstream	v5	2026-09-13	rozak-2026-neurovascular-dl.json	json
Self-association enhances early attentional selectio…ran via scripts/pipeline.py	stale	v3	2026-09-13	scheller-2026-self-prioritization.json	json
Impaired excitability of fast-spiking neurons in a n…ran via scripts/pipeline.py	stale	v5	2026-09-13	wengert-2026-kcnc1.json	json

Inputs and outputs

Produces: coverage/{paper}.json

One per paper — the table above links each one that exists.
Views: document — declared, and this artifact is not the shape this view needs
table — rendered above, over the 128 spans.orphans in the artifact

Running it

The command comes from the declaration, so this text and what actually runs cannot diverge. pipeline.py run also runs the unmet dependencies first.

python3 scripts/pipeline.py run <paper> coverage

Underneath, that runs cd extract && python3 -m claim_graphs.cli coverage --paper {paper} --json ../coverage/{paper}.json.