Abstract ↔ claims
run not observed · v1 provisional awaiting approvalWhich claims does the abstract carry, and which does it drop?
for A three-dimensional immunofluorescence atlas of the brain of the hackled-orb weaver spider, Uloborus diversus · this layer across all papers · json
Provisional
This layer needs a corpus-scope decision that has not been ruled on yet, so what it produces would change if the decision changed. It waits on claim-format, relation-vocab.
Awaiting approval
Waiting for approval. That is a statement about the record, not about whether anyone has read this: people read the corpus without stamping what they read, and only a stamp leaves a trace. Approval is an operation on a version, not a step of its own — it is recorded against the version it was granted to, so running this layer again does not carry it forward.
What this layer produced
Abstract mapped to claims
The paper's abstract is shown with each sentence linked to the claim(s) it represents in the dependency graph. Hover or click a sentence to highlight the corresponding claim cards. Below: what the graph contains that the abstract leaves out, and vice versa.
1Spider orb-web building is a captivating, rare example of animal construction, whose neural underpinnings remain undiscovered. 2We created a three-dimensional atlas for the hackled-orb weaver, Uloborus diversus, based on immunostaining for the presynaptic component, synapsin, in whole-mounted spider synganglia. 3Whereas spider neuroanatomy has thus far been most comprehensively studied in cursorial species, this optically sectioned atlas contributes a continuous, finely resolved model of the central nervous system of an orb-web building spider. 4Aligned to this volume, we examined the expression patterns of neuronal populations representing many of the classical neurotransmitters and neuromodulators (GABA, acetylcholine, serotonin, and octopamine/tyramine), as well as a subset of neuropeptides (allatostatin A, crustacean cardioactive peptide (CCAP), FMRFamide, proctolin) – detailing immunoreactivity in an unbiased fashion throughout the synganglion to reveal co-expression in known structures (such as the arcuate body), as well as novel neuropils not readily apparent in prior spider research, including the tonsillar neuropil as well as a potential protocerebral bridge. 5These structures provide targets for future functional studies, and taken together, could represent a spider equivalent of the central complex, contributing to behaviors such as web-building.
- M1 gad-antibody-peripheral-penetration-only all (assessment — stated in Results introduction) The anti-GAD antibody (Sigma-Aldrich G5163, rabbit polyclonal) used to detect GABAergic neurons in this atlas shows limited tissue penetration restricted to the periphery of the whole-mount preparation, reducing the utility of the GABAergic immunoreactivity channel for mapping interior neuropil structures; this limitation is acknowledged by the authors and affects interpretation of GABA patterns in deep neuropils such as the protocerebral bridge and arcuate body interior.
How it is defined
A model answers this layer, so the prompt is the layer. It is reproduced below from the committed file, and it is a declared input — editing it makes every run that used it stale.
The declaration names this path and the repository does not have it. An input that does not exist hashes to nothing, so it cannot make a run stale — the layer is declared to depend on something it is not in fact tracking.
Artifacts
Versions
From the run ledger. There is no changelog beside it to keep in step.
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v1 · 2026-04-20 · unrecorded backfilled from the artifact
backfilled from the artifact on disk
This layer across the corpus
Across the corpus
9 run not observed · 1 stale·a paper links to its own cell, where this layer's output for it is rendered
Inputs and outputs
- Reads, besides its dependencies
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- extract/prompts/abstract-map.md · declared, and not in the repository — it hashes to nothing, so it cannot make a run stale
- Produces
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- site/src/data/abstract-mapping/{paper}.json
One per paper — the table above links each one that exists.
- Views
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- document — rendered above, from the artifact itself
- comparison — on the cell page, two versions aligned by the matcher, wherever the ledger holds more than one
Running it
The command comes from the declaration, so this text and what actually runs cannot
diverge. pipeline.py run also runs the unmet dependencies first.
python3 scripts/pipeline.py run <paper> abstract-map
Underneath, that runs cd extract && python3 -m claim_graphs.cli abstract-map --paper {paper}.