Plain wording
stale · v2 provisional awaiting approvalWhat does each claim say, in one sentence a non-specialist can read?
for A three-dimensional immunofluorescence atlas of the brain of the hackled-orb weaver spider, Uloborus diversus · this layer across all papers · json
Provisional
This layer needs a corpus-scope decision that has not been ruled on yet, so what it produces would change if the decision changed. It waits on claim-format, relation-vocab.
Awaiting approval
Waiting for approval. That is a statement about the record, not about whether anyone has read this: people read the corpus without stamping what they read, and only a stamp leaves a trace. Approval is an operation on a version, not a step of its own — it is recorded against the version it was granted to, so running this layer again does not carry it forward.
What it produced17 claims
Read from site/src/data/plain-claims/artiushin-2026-spider-atlas.json · 4 KB. model supplied:runs/artiushin-2026-spider-atlas/plain-claim.answer.jsonprompt extract/prompts/plain-claim.md
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The arcuate body is built from four sublayers, and each neurotransmitter population innervates its own subset of them.
slug arcuate-body-four-sublayer-differentialrole empiricalpanel fig11C, fig11D, fig12
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Staining several neurotransmitters at once separates arcuate body layers that synapsin staining alone leaves indistinct.
slug arcuate-body-layers-neurotransmitter-distinguishedrole empiricalpanel fig (arcuate body)
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Every claim here is an anatomical observation read off the atlas volumes rather than a statistical test.
slug atlas-observational-scoperole scopepanel all figures (assessment)
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Serotonin and octopamine/tyramine fibres fill the cheliceral neuropil most heavily and continue just medial to it.
slug cheliceral-neuropil-serotonin-tdc2-dominantrole empiricalpanel fig4Eiv, fig4Ev, fig4Eiii
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The anti-GAD antibody stains only the outer edge of the whole-mount, so GABA patterns in the deeper neuropils cannot be trusted.
slug gad-antibody-peripheral-penetration-onlyrole methodologicalpanel all (assessment — stated in Results introduction)
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The globuli cells at the mushroom body heads stain for ChAT and, more weakly, GAD, marking them as cholinergic and GABAergic.
slug globuli-cells-cholinergic-gabaergicrole empiricalpanel fig7H, fig7I
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Serotonin completely fills the newly named hagstone neuropil, and its staining is what marks the structure's boundaries.
slug hagstone-neuropil-serotonin-definedrole empiricalpanel fig6Bi, fig6Ci, fig6Di
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Serotonin fibres reach each leg neuropil from the dorsal-most tract and fill it as two equal halves around a central void.
slug leg-neuropil-serotonin-bilateral-innervationrole empiricalpanel fig2Bi
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All four pairs of leg neuropils carry the same innervation pattern for every neurotransmitter mapped.
slug leg-neuropils-consistent-innervationrole empiricalpanel fig2
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Uloborus diversus, a web-building spider, has complete mushroom bodies, and only allatostatin A is found throughout them.
slug mushroom-bodies-present-asta-exclusiverole empiricalpanel fig7A, fig7B, fig7E
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Octopamine/tyramine fibres ring the edge of the opisthosomal neuropil and form a ladder of crossing projections toward its back.
slug opisthosomal-neuropil-tdc2-perimeter-ladderrole empiricalpanel fig3Bii, fig3Cii
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Acetylcholine and octopamine/tyramine stain most strongly in the pedipalpal neuropil, and neither reaches its front portion.
slug pedipalpal-neuropil-chat-tdc2-dominantrole empiricalpanel fig4Bii, fig4Biii
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The spider brain contains a protocerebral bridge, a candidate counterpart of the insect central complex used in path integration.
slug protocerebral-bridge-candidate-central-complexrole interpretationpanel fig (central complex candidate)
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The protocerebral bridge is layered by transmitter, with GABA spanning it and octopamine, proctolin and acetylcholine in bands.
slug protocerebral-bridge-layered-transmitter-architecturerole empiricalpanel fig10Bi-x
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A previously undescribed neuropil, named the tonsillar neuropil, stands out in the spider synganglion by its staining pattern.
slug tonsillar-neuropil-novel-structurerole empiricalpanel fig (tonsillar neuropil)
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Serotonin fills the tonsillar neuropil's core, octopamine/tyramine forms a shell around it, and two peptides sit only at its rear.
slug tonsillar-neuropil-serotonin-core-tdc2-shellrole empiricalpanel fig9Ci-x
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A three-dimensional atlas places GABA, acetylcholine, serotonin, octopamine and several peptides in the spider's neuropils.
slug uloborus-synganglion-neurotransmitter-atlasrole methodologicalpanel figs 1-13
| # | slug | role | panel | plain |
|---|---|---|---|---|
| 1 | arcuate-body-four-sublayer-differential | empirical | fig11C, fig11D, fig12 | The arcuate body is built from four sublayers, and each neurotransmitter population innervates its own subset of them. |
| 2 | arcuate-body-layers-neurotransmitter-distinguished | empirical | fig (arcuate body) | Staining several neurotransmitters at once separates arcuate body layers that synapsin staining alone leaves indistinct. |
| 3 | atlas-observational-scope | scope | all figures (assessment) | Every claim here is an anatomical observation read off the atlas volumes rather than a statistical test. |
| 4 | cheliceral-neuropil-serotonin-tdc2-dominant | empirical | fig4Eiv, fig4Ev, fig4Eiii | Serotonin and octopamine/tyramine fibres fill the cheliceral neuropil most heavily and continue just medial to it. |
| 5 | gad-antibody-peripheral-penetration-only | methodological | all (assessment — stated in Results introduction) | The anti-GAD antibody stains only the outer edge of the whole-mount, so GABA patterns in the deeper neuropils cannot be trusted. |
| 6 | globuli-cells-cholinergic-gabaergic | empirical | fig7H, fig7I | The globuli cells at the mushroom body heads stain for ChAT and, more weakly, GAD, marking them as cholinergic and GABAergic. |
| 7 | hagstone-neuropil-serotonin-defined | empirical | fig6Bi, fig6Ci, fig6Di | Serotonin completely fills the newly named hagstone neuropil, and its staining is what marks the structure's boundaries. |
| 8 | leg-neuropil-serotonin-bilateral-innervation | empirical | fig2Bi | Serotonin fibres reach each leg neuropil from the dorsal-most tract and fill it as two equal halves around a central void. |
| 9 | leg-neuropils-consistent-innervation | empirical | fig2 | All four pairs of leg neuropils carry the same innervation pattern for every neurotransmitter mapped. |
| 10 | mushroom-bodies-present-asta-exclusive | empirical | fig7A, fig7B, fig7E | Uloborus diversus, a web-building spider, has complete mushroom bodies, and only allatostatin A is found throughout them. |
| 11 | opisthosomal-neuropil-tdc2-perimeter-ladder | empirical | fig3Bii, fig3Cii | Octopamine/tyramine fibres ring the edge of the opisthosomal neuropil and form a ladder of crossing projections toward its back. |
| 12 | pedipalpal-neuropil-chat-tdc2-dominant | empirical | fig4Bii, fig4Biii | Acetylcholine and octopamine/tyramine stain most strongly in the pedipalpal neuropil, and neither reaches its front portion. |
| 13 | protocerebral-bridge-candidate-central-complex | interpretation | fig (central complex candidate) | The spider brain contains a protocerebral bridge, a candidate counterpart of the insect central complex used in path integration. |
| 14 | protocerebral-bridge-layered-transmitter-architecture | empirical | fig10Bi-x | The protocerebral bridge is layered by transmitter, with GABA spanning it and octopamine, proctolin and acetylcholine in bands. |
| 15 | tonsillar-neuropil-novel-structure | empirical | fig (tonsillar neuropil) | A previously undescribed neuropil, named the tonsillar neuropil, stands out in the spider synganglion by its staining pattern. |
| 16 | tonsillar-neuropil-serotonin-core-tdc2-shell | empirical | fig9Ci-x | Serotonin fills the tonsillar neuropil's core, octopamine/tyramine forms a shell around it, and two peptides sit only at its rear. |
| 17 | uloborus-synganglion-neurotransmitter-atlas | methodological | figs 1-13 | A three-dimensional atlas places GABA, acetylcholine, serotonin, octopamine and several peptides in the spider's neuropils. |
How it is defined
A model answers this layer, so the prompt is the layer. It is reproduced below from the committed file, and it is a declared input — editing it makes every run that used it stale.
The declaration names this path and the repository does not have it. An input that does not exist hashes to nothing, so it cannot make a run stale — the layer is declared to depend on something it is not in fact tracking.
The declaration names this path and the repository does not have it. An input that does not exist hashes to nothing, so it cannot make a run stale — the layer is declared to depend on something it is not in fact tracking.
Artifacts
Versions
From the run ledger. There is no changelog beside it to keep in step.
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v2 · 2026-09-12 · supplied:runs/artiushin-2026-spider-atlas/plain-claim.answer.json
re-run after the runner changed; no cost recorded — these answers predate the field
python3 scripts/plain_claims.py artiushin-2026-spider-atlas --answer runs/artiushin-2026-spider-atlas/plain-claim.answer.json
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v1 · 2026-09-11 · supplied:runs/artiushin-2026-spider-atlas/plain-claim.answer.json
first run: one plain sentence per claim, answered by Claude Opus 5 through --dump-prompt and fed back through --answer
python3 scripts/plain_claims.py artiushin-2026-spider-atlas --answer runs/artiushin-2026-spider-atlas/plain-claim.answer.json
This layer across the corpus
Across the corpus
10 stale·a paper links to its own cell, where this layer's output for it is rendered
| Paper | State | Version | Last run | Output | Cell |
|---|---|---|---|---|---|
| A three-dimensional immunofluorescence atlas of the …re-run after the runner changed; no cost recorded — these answers predate the field | stale | v2 | 2026-09-12 | artiushin-2026-spider-atlas.json | json |
| Distinct representational properties of cues and con…re-run after the runner changed; no cost recorded — these answers predate the field | stale | v2 | 2026-09-12 | bouyeure-2026-fear-rsa.json | json |
| Computational modelling identifies key determinants …re-run after the runner changed; no cost recorded — these answers predate the field | stale | v2 | 2026-09-12 | ejdrup-2026-dopamine.json | json |
| Contributions of insula and superior temporal sulcus…re-run after the runner changed | stale | v6 | 2026-09-12 | gadeke-2026-guilt-insula.json | json |
| Spatially targeted inhibitory rhythms differentially…re-run after the runner changed | stale | v3 | 2026-09-12 | headley-2026-inhibitory-rhythms.json | json |
| Feedback of peripheral saccade targets to early fove…re-run after the runner changed; one wording added for the promoted claim | stale | v2 | 2026-09-12 | kammer-2026-foveal-feedback.json | json |
| iGABASnFR2 is an improved genetically encoded protei…re-run after the runner changed; no cost recorded — these answers predate the field | stale | v3 | 2026-09-12 | kolb-2026-igabasnfr2.json | json |
| A deep learning pipeline for mapping in situ network…re-run after the runner changed; no cost recorded — these answers predate the field | stale | v2 | 2026-09-12 | rozak-2026-neurovascular-dl.json | json |
| Self-association enhances early attentional selectio…re-run after the runner changed; no cost recorded — these answers predate the field | stale | v2 | 2026-09-12 | scheller-2026-self-prioritization.json | json |
| Impaired excitability of fast-spiking neurons in a n…re-run after the runner changed; no cost recorded — these answers predate the field | stale | v2 | 2026-09-12 | wengert-2026-kcnc1.json | json |
Inputs and outputs
- Reads, besides its dependencies
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- scripts/plain_claims.py · declared, and not in the repository — it hashes to nothing, so it cannot make a run stale
- extract/prompts/plain-claim.md · declared, and not in the repository — it hashes to nothing, so it cannot make a run stale
- Produces
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- site/src/data/plain-claims/{paper}.json
One per paper — the table above links each one that exists.
- Views
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- list — rendered above, over the 17 claims in the artifact
- table — rendered above, over the 17 claims in the artifact
Running it
The command comes from the declaration, so this text and what actually runs cannot
diverge. pipeline.py run also runs the unmet dependencies first.
python3 scripts/pipeline.py run <paper> plain-claim
Underneath, that runs python3 scripts/plain_claims.py {paper} --answer runs/{paper}/plain-claim.answer.json.