Plain wording

stale · v2 provisional awaiting approval

What does each claim say, in one sentence a non-specialist can read?

for Distinct representational properties of cues and contexts shape fear and reversal learning · this layer across all papers · json

Provisional

This layer needs a corpus-scope decision that has not been ruled on yet, so what it produces would change if the decision changed. It waits on claim-format, relation-vocab.

Awaiting approval

Waiting for approval. That is a statement about the record, not about whether anyone has read this: people read the corpus without stamping what they read, and only a stamp leaves a trace. Approval is an operation on a version, not a step of its own — it is recorded against the version it was granted to, so running this layer again does not carry it forward.

Out of date

These inputs changed after this ran:

  • claims/bouyeure-2026-fear-rsa/cue-generalization-increases-acquisition.md
  • claims/bouyeure-2026-fear-rsa/dual-strategy-reversal-generalize-plus-specify.md
  • claims/bouyeure-2026-fear-rsa/trace-conditioning-hippocampus-engaged.md

What it produced30 claims

Read from site/src/data/plain-claims/bouyeure-2026-fear-rsa.json · 8 KB. model supplied:runs/bouyeure-2026-fear-rsa/plain-claim.answer.jsonprompt extract/prompts/plain-claim.md

  1. Shock expectancy ranked the cues by their current danger in every phase, and followed the cues through the reversal.

    slug behavioral-learning-confirms-contingenciesrole empiricalpanel fig2A

  2. Patterns for the two contexts grew more distinct during reversal than during acquisition, most clearly in prefrontal cortex.

    slug context-specificity-increases-reversalrole empiricalpanel fig5B

  3. Sharper prefrontal context coding revives the once-dangerous cue's acquisition pattern in ACC, the once-safe cue's in precuneus.

    slug context-specificity-predicts-acquisition-reinstatement-regio…role empiricalpanel fig5Di

  4. Even in wholly new contexts, sharper prefrontal context coding predicts reviving the newly dangerous cue in middle temporal gyrus.

    slug context-specificity-predicts-reinstatement-new-context-mtgrole controlpanel fig5Diii

  5. In the old context, sharper prefrontal context coding predicts dmPFC reviving the newly dangerous cue's reversal pattern.

    slug context-specificity-predicts-reversal-reinstatement-dmpfcrole empiricalpanel fig5Dii

  6. During acquisition, threatening cues drive more activity than safe cues in dACC, superior frontal gyrus and caudate nucleus.

    slug cs-plus-univariate-fear-network-acquisitionrole empiricalpanel fig2Bi

  7. During fear acquisition, different threatening cues come to share one pattern in the fear network instead of staying distinct.

    slug cue-generalization-increases-acquisitionrole empiricalpanel fig3A

  8. After reversal, the shared pattern for consistently threatening cues survives only in dACC, not across the wider fear network.

    slug cue-generalization-limited-dacc-reversal-consistentrole empiricalpanel fig3Bi

  9. After reversal, currently dangerous cues drive more fear-network activity than currently safe ones, whatever they meant before.

    slug current-threat-activates-fear-network-reversalrole empiricalpanel fig2Bii

  10. Back in the original context, dmPFC revives category-level patterns from acquisition rather than from the new-context test.

    slug dmpfc-reinstates-acquisition-traces-generalizedrole empiricalpanel fig4Bii

  11. Reversal learning lumps the currently dangerous cues together while keeping the cue whose threat value changed separate.

    slug dual-strategy-reversal-generalize-plus-specifyrole synthesispanel fig4 (synthesis)

  12. After reversal, the newly dangerous cue takes on the same shared fear-network pattern the originally feared cue had.

    slug generalized-pattern-cs-minus-plus-reversalrole empiricalpanel fig3Bii

  13. Prefrontal cortex codes contexts as distinct patterns, and that distinctness lets an old fear memory return in its own context.

    slug hypothesis-context-specificity-supports-renewalrole hypothesispanel hypothesis

  14. The fear network lumps currently dangerous cues together while higher-order cortex keeps the cues whose meaning changed apart.

    slug hypothesis-dual-strategy-reversalrole hypothesispanel hypothesis

  15. The fear network codes dangerous cues as a class, so any cue that becomes dangerous inherits the class representation.

    slug hypothesis-fear-network-generalizes-threat-cuesrole hypothesispanel hypothesis

  16. Inferior frontal gyrus revives cue-specific patterns from the most recent learning, the reversal phase, rather than earlier ones.

    slug ifg-reinstates-reversal-traces-item-specificrole empiricalpanel fig4Bi

  17. Individual cues keep their own stable patterns in temporal cortex through the shock-free tests, while class patterns do not.

    slug item-stability-persists-test-phasesrole empiricalpanel fig3C, fig3D

  18. During reversal, precuneus and prefrontal cortex hold a distinct, stable pattern for the cue whose threat value changed.

    slug item-stability-precuneus-pfc-reversalrole empiricalpanel fig4

  19. All pattern-similarity analyses use only trials without a shock, dropping the trials likely to carry the strongest fear responses.

    slug lss-unreinforced-trials-onlyrole methodologicalpanel methods (RSA section)

  20. In the two test phases no cue drove more overall activity than another, though participants still expected shocks differently.

    slug no-bold-differences-test-phasesrole controlpanel fig2B (test phases)

  21. During acquisition, a cue's own pattern was no more stable for threatening than for safe cues anywhere in the brain.

    slug no-item-stability-difference-acquisitionrole empiricalpanel fig3A

  22. Participants whose prefrontal cortex coded contexts more distinctly during reversal showed more fear renewal at test.

    slug pfc-context-specificity-predicts-renewalrole empiricalpanel fig5

  23. Prefrontal context patterns should grow more distinct during reversal than acquisition, when context begins to predict danger.

    slug prediction-context-specificity-increases-during-reversalrole predictionpanel prediction

  24. During reversal the newly dangerous cue should take on the same shared fear-network pattern the originally feared cue acquired.

    slug prediction-cs-minus-plus-generalizes-reversalrole predictionpanel prediction

  25. Threatening cues should share patterns more than safe cues do, in dACC, superior frontal gyrus, caudate and insula.

    slug prediction-cue-generalization-fear-network-acquisitionrole predictionpanel prediction

  26. Cues whose threat value changed should hold more stable individual patterns in precuneus, IFG and prefrontal cortex.

    slug prediction-item-stability-changing-cues-reversalrole predictionpanel prediction

  27. Participants whose prefrontal cortex codes contexts more distinctly should revive acquisition fear memories more strongly at test.

    slug prediction-pfc-context-specificity-tracks-renewalrole predictionpanel prediction

  28. Cues that were dangerous before but are safe now still stir the fear network weakly, a trace of the original fear memory.

    slug prior-threat-activates-fear-network-weaklyrole interpretationpanel fig2Biii

  29. The regions tested in the follow-up analyses were picked from significant clusters in the same data, which inflates significance.

    slug rsa-roi-derived-from-searchlightrole methodologicalpanel fig4A (ROI definition procedure)

  30. The study uses trace conditioning, a gap between cue and shock, assuming from prior work that this engages the hippocampus.

    slug trace-conditioning-hippocampus-engagedrole scopepanel fig1 (methods)

How it is defined

A model answers this layer, so the prompt is the layer. It is reproduced below from the committed file, and it is a declared input — editing it makes every run that used it stale.

scripts/plain_claims.pythe script that runs itnot in the repository

The declaration names this path and the repository does not have it. An input that does not exist hashes to nothing, so it cannot make a run stale — the layer is declared to depend on something it is not in fact tracking.

extract/prompts/plain-claim.mdthe prompt it runs undernot in the repository

The declaration names this path and the repository does not have it. An input that does not exist hashes to nothing, so it cannot make a run stale — the layer is declared to depend on something it is not in fact tracking.

Artifacts

Versions

From the run ledger. There is no changelog beside it to keep in step.

  1. v2 · 2026-09-12 · supplied:runs/bouyeure-2026-fear-rsa/plain-claim.answer.json

    re-run after the runner changed; no cost recorded — these answers predate the field

    python3 scripts/plain_claims.py bouyeure-2026-fear-rsa --answer runs/bouyeure-2026-fear-rsa/plain-claim.answer.json

  2. v1 · 2026-09-11 · supplied:runs/bouyeure-2026-fear-rsa/plain-claim.answer.json

    first run: one plain sentence per claim, answered by Claude Opus 5 through --dump-prompt and fed back through --answer

    python3 scripts/plain_claims.py bouyeure-2026-fear-rsa --answer runs/bouyeure-2026-fear-rsa/plain-claim.answer.json

This layer across the corpus

Across the corpus

10 stale·a paper links to its own cell, where this layer's output for it is rendered

PaperStateVersionLast runOutputCell
A three-dimensional immunofluorescence atlas of the …re-run after the runner changed; no cost recorded — these answers predate the fieldstalev22026-09-12artiushin-2026-spider-atlas.jsonjson
Distinct representational properties of cues and con…re-run after the runner changed; no cost recorded — these answers predate the fieldstalev22026-09-12bouyeure-2026-fear-rsa.jsonjson
Computational modelling identifies key determinants …re-run after the runner changed; no cost recorded — these answers predate the fieldstalev22026-09-12ejdrup-2026-dopamine.jsonjson
Contributions of insula and superior temporal sulcus…re-run after the runner changedstalev62026-09-12gadeke-2026-guilt-insula.jsonjson
Spatially targeted inhibitory rhythms differentially…re-run after the runner changedstalev32026-09-12headley-2026-inhibitory-rhythms.jsonjson
Feedback of peripheral saccade targets to early fove…re-run after the runner changed; one wording added for the promoted claimstalev22026-09-12kammer-2026-foveal-feedback.jsonjson
iGABASnFR2 is an improved genetically encoded protei…re-run after the runner changed; no cost recorded — these answers predate the fieldstalev32026-09-12kolb-2026-igabasnfr2.jsonjson
A deep learning pipeline for mapping in situ network…re-run after the runner changed; no cost recorded — these answers predate the fieldstalev22026-09-12rozak-2026-neurovascular-dl.jsonjson
Self-association enhances early attentional selectio…re-run after the runner changed; no cost recorded — these answers predate the fieldstalev22026-09-12scheller-2026-self-prioritization.jsonjson
Impaired excitability of fast-spiking neurons in a n…re-run after the runner changed; no cost recorded — these answers predate the fieldstalev22026-09-12wengert-2026-kcnc1.jsonjson

Inputs and outputs

Reads, besides its dependencies
Produces
  • site/src/data/plain-claims/{paper}.json

One per paper — the table above links each one that exists.

Views
  • list — rendered above, over the 17 claims in the artifact
  • table — rendered above, over the 17 claims in the artifact

Running it

The command comes from the declaration, so this text and what actually runs cannot diverge. pipeline.py run also runs the unmet dependencies first.

python3 scripts/pipeline.py run <paper> plain-claim

Underneath, that runs python3 scripts/plain_claims.py {paper} --answer runs/{paper}/plain-claim.answer.json.