Plain wording
stale · v2 provisional awaiting approvalWhat does each claim say, in one sentence a non-specialist can read?
for Distinct representational properties of cues and contexts shape fear and reversal learning · this layer across all papers · json
Provisional
This layer needs a corpus-scope decision that has not been ruled on yet, so what it produces would change if the decision changed. It waits on claim-format, relation-vocab.
Awaiting approval
Waiting for approval. That is a statement about the record, not about whether anyone has read this: people read the corpus without stamping what they read, and only a stamp leaves a trace. Approval is an operation on a version, not a step of its own — it is recorded against the version it was granted to, so running this layer again does not carry it forward.
Out of date
These inputs changed after this ran:
- claims/bouyeure-2026-fear-rsa/cue-generalization-increases-acquisition.md
- claims/bouyeure-2026-fear-rsa/dual-strategy-reversal-generalize-plus-specify.md
- claims/bouyeure-2026-fear-rsa/trace-conditioning-hippocampus-engaged.md
What it produced30 claims
Read from site/src/data/plain-claims/bouyeure-2026-fear-rsa.json · 8 KB. model supplied:runs/bouyeure-2026-fear-rsa/plain-claim.answer.jsonprompt extract/prompts/plain-claim.md
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Shock expectancy ranked the cues by their current danger in every phase, and followed the cues through the reversal.
slug behavioral-learning-confirms-contingenciesrole empiricalpanel fig2A
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Patterns for the two contexts grew more distinct during reversal than during acquisition, most clearly in prefrontal cortex.
slug context-specificity-increases-reversalrole empiricalpanel fig5B
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Sharper prefrontal context coding revives the once-dangerous cue's acquisition pattern in ACC, the once-safe cue's in precuneus.
slug context-specificity-predicts-acquisition-reinstatement-regio…role empiricalpanel fig5Di
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Even in wholly new contexts, sharper prefrontal context coding predicts reviving the newly dangerous cue in middle temporal gyrus.
slug context-specificity-predicts-reinstatement-new-context-mtgrole controlpanel fig5Diii
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In the old context, sharper prefrontal context coding predicts dmPFC reviving the newly dangerous cue's reversal pattern.
slug context-specificity-predicts-reversal-reinstatement-dmpfcrole empiricalpanel fig5Dii
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During acquisition, threatening cues drive more activity than safe cues in dACC, superior frontal gyrus and caudate nucleus.
slug cs-plus-univariate-fear-network-acquisitionrole empiricalpanel fig2Bi
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During fear acquisition, different threatening cues come to share one pattern in the fear network instead of staying distinct.
slug cue-generalization-increases-acquisitionrole empiricalpanel fig3A
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After reversal, the shared pattern for consistently threatening cues survives only in dACC, not across the wider fear network.
slug cue-generalization-limited-dacc-reversal-consistentrole empiricalpanel fig3Bi
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After reversal, currently dangerous cues drive more fear-network activity than currently safe ones, whatever they meant before.
slug current-threat-activates-fear-network-reversalrole empiricalpanel fig2Bii
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Back in the original context, dmPFC revives category-level patterns from acquisition rather than from the new-context test.
slug dmpfc-reinstates-acquisition-traces-generalizedrole empiricalpanel fig4Bii
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Reversal learning lumps the currently dangerous cues together while keeping the cue whose threat value changed separate.
slug dual-strategy-reversal-generalize-plus-specifyrole synthesispanel fig4 (synthesis)
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After reversal, the newly dangerous cue takes on the same shared fear-network pattern the originally feared cue had.
slug generalized-pattern-cs-minus-plus-reversalrole empiricalpanel fig3Bii
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Prefrontal cortex codes contexts as distinct patterns, and that distinctness lets an old fear memory return in its own context.
slug hypothesis-context-specificity-supports-renewalrole hypothesispanel hypothesis
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The fear network lumps currently dangerous cues together while higher-order cortex keeps the cues whose meaning changed apart.
slug hypothesis-dual-strategy-reversalrole hypothesispanel hypothesis
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The fear network codes dangerous cues as a class, so any cue that becomes dangerous inherits the class representation.
slug hypothesis-fear-network-generalizes-threat-cuesrole hypothesispanel hypothesis
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Inferior frontal gyrus revives cue-specific patterns from the most recent learning, the reversal phase, rather than earlier ones.
slug ifg-reinstates-reversal-traces-item-specificrole empiricalpanel fig4Bi
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Individual cues keep their own stable patterns in temporal cortex through the shock-free tests, while class patterns do not.
slug item-stability-persists-test-phasesrole empiricalpanel fig3C, fig3D
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During reversal, precuneus and prefrontal cortex hold a distinct, stable pattern for the cue whose threat value changed.
slug item-stability-precuneus-pfc-reversalrole empiricalpanel fig4
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All pattern-similarity analyses use only trials without a shock, dropping the trials likely to carry the strongest fear responses.
slug lss-unreinforced-trials-onlyrole methodologicalpanel methods (RSA section)
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In the two test phases no cue drove more overall activity than another, though participants still expected shocks differently.
slug no-bold-differences-test-phasesrole controlpanel fig2B (test phases)
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During acquisition, a cue's own pattern was no more stable for threatening than for safe cues anywhere in the brain.
slug no-item-stability-difference-acquisitionrole empiricalpanel fig3A
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Participants whose prefrontal cortex coded contexts more distinctly during reversal showed more fear renewal at test.
slug pfc-context-specificity-predicts-renewalrole empiricalpanel fig5
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Prefrontal context patterns should grow more distinct during reversal than acquisition, when context begins to predict danger.
slug prediction-context-specificity-increases-during-reversalrole predictionpanel prediction
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During reversal the newly dangerous cue should take on the same shared fear-network pattern the originally feared cue acquired.
slug prediction-cs-minus-plus-generalizes-reversalrole predictionpanel prediction
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Threatening cues should share patterns more than safe cues do, in dACC, superior frontal gyrus, caudate and insula.
slug prediction-cue-generalization-fear-network-acquisitionrole predictionpanel prediction
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Cues whose threat value changed should hold more stable individual patterns in precuneus, IFG and prefrontal cortex.
slug prediction-item-stability-changing-cues-reversalrole predictionpanel prediction
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Participants whose prefrontal cortex codes contexts more distinctly should revive acquisition fear memories more strongly at test.
slug prediction-pfc-context-specificity-tracks-renewalrole predictionpanel prediction
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Cues that were dangerous before but are safe now still stir the fear network weakly, a trace of the original fear memory.
slug prior-threat-activates-fear-network-weaklyrole interpretationpanel fig2Biii
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The regions tested in the follow-up analyses were picked from significant clusters in the same data, which inflates significance.
slug rsa-roi-derived-from-searchlightrole methodologicalpanel fig4A (ROI definition procedure)
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The study uses trace conditioning, a gap between cue and shock, assuming from prior work that this engages the hippocampus.
slug trace-conditioning-hippocampus-engagedrole scopepanel fig1 (methods)
| # | slug | role | panel | plain |
|---|---|---|---|---|
| 1 | behavioral-learning-confirms-contingencies | empirical | fig2A | Shock expectancy ranked the cues by their current danger in every phase, and followed the cues through the reversal. |
| 2 | context-specificity-increases-reversal | empirical | fig5B | Patterns for the two contexts grew more distinct during reversal than during acquisition, most clearly in prefrontal cortex. |
| 3 | context-specificity-predicts-acquisition-reinstatement-regional-dissociation | empirical | fig5Di | Sharper prefrontal context coding revives the once-dangerous cue's acquisition pattern in ACC, the once-safe cue's in precuneus. |
| 4 | context-specificity-predicts-reinstatement-new-context-mtg | control | fig5Diii | Even in wholly new contexts, sharper prefrontal context coding predicts reviving the newly dangerous cue in middle temporal gyrus. |
| 5 | context-specificity-predicts-reversal-reinstatement-dmpfc | empirical | fig5Dii | In the old context, sharper prefrontal context coding predicts dmPFC reviving the newly dangerous cue's reversal pattern. |
| 6 | cs-plus-univariate-fear-network-acquisition | empirical | fig2Bi | During acquisition, threatening cues drive more activity than safe cues in dACC, superior frontal gyrus and caudate nucleus. |
| 7 | cue-generalization-increases-acquisition | empirical | fig3A | During fear acquisition, different threatening cues come to share one pattern in the fear network instead of staying distinct. |
| 8 | cue-generalization-limited-dacc-reversal-consistent | empirical | fig3Bi | After reversal, the shared pattern for consistently threatening cues survives only in dACC, not across the wider fear network. |
| 9 | current-threat-activates-fear-network-reversal | empirical | fig2Bii | After reversal, currently dangerous cues drive more fear-network activity than currently safe ones, whatever they meant before. |
| 10 | dmpfc-reinstates-acquisition-traces-generalized | empirical | fig4Bii | Back in the original context, dmPFC revives category-level patterns from acquisition rather than from the new-context test. |
| 11 | dual-strategy-reversal-generalize-plus-specify | synthesis | fig4 (synthesis) | Reversal learning lumps the currently dangerous cues together while keeping the cue whose threat value changed separate. |
| 12 | generalized-pattern-cs-minus-plus-reversal | empirical | fig3Bii | After reversal, the newly dangerous cue takes on the same shared fear-network pattern the originally feared cue had. |
| 13 | hypothesis-context-specificity-supports-renewal | hypothesis | hypothesis | Prefrontal cortex codes contexts as distinct patterns, and that distinctness lets an old fear memory return in its own context. |
| 14 | hypothesis-dual-strategy-reversal | hypothesis | hypothesis | The fear network lumps currently dangerous cues together while higher-order cortex keeps the cues whose meaning changed apart. |
| 15 | hypothesis-fear-network-generalizes-threat-cues | hypothesis | hypothesis | The fear network codes dangerous cues as a class, so any cue that becomes dangerous inherits the class representation. |
| 16 | ifg-reinstates-reversal-traces-item-specific | empirical | fig4Bi | Inferior frontal gyrus revives cue-specific patterns from the most recent learning, the reversal phase, rather than earlier ones. |
| 17 | item-stability-persists-test-phases | empirical | fig3C, fig3D | Individual cues keep their own stable patterns in temporal cortex through the shock-free tests, while class patterns do not. |
| 18 | item-stability-precuneus-pfc-reversal | empirical | fig4 | During reversal, precuneus and prefrontal cortex hold a distinct, stable pattern for the cue whose threat value changed. |
| 19 | lss-unreinforced-trials-only | methodological | methods (RSA section) | All pattern-similarity analyses use only trials without a shock, dropping the trials likely to carry the strongest fear responses. |
| 20 | no-bold-differences-test-phases | control | fig2B (test phases) | In the two test phases no cue drove more overall activity than another, though participants still expected shocks differently. |
| 21 | no-item-stability-difference-acquisition | empirical | fig3A | During acquisition, a cue's own pattern was no more stable for threatening than for safe cues anywhere in the brain. |
| 22 | pfc-context-specificity-predicts-renewal | empirical | fig5 | Participants whose prefrontal cortex coded contexts more distinctly during reversal showed more fear renewal at test. |
| 23 | prediction-context-specificity-increases-during-reversal | prediction | prediction | Prefrontal context patterns should grow more distinct during reversal than acquisition, when context begins to predict danger. |
| 24 | prediction-cs-minus-plus-generalizes-reversal | prediction | prediction | During reversal the newly dangerous cue should take on the same shared fear-network pattern the originally feared cue acquired. |
| 25 | prediction-cue-generalization-fear-network-acquisition | prediction | prediction | Threatening cues should share patterns more than safe cues do, in dACC, superior frontal gyrus, caudate and insula. |
| 26 | prediction-item-stability-changing-cues-reversal | prediction | prediction | Cues whose threat value changed should hold more stable individual patterns in precuneus, IFG and prefrontal cortex. |
| 27 | prediction-pfc-context-specificity-tracks-renewal | prediction | prediction | Participants whose prefrontal cortex codes contexts more distinctly should revive acquisition fear memories more strongly at test. |
| 28 | prior-threat-activates-fear-network-weakly | interpretation | fig2Biii | Cues that were dangerous before but are safe now still stir the fear network weakly, a trace of the original fear memory. |
| 29 | rsa-roi-derived-from-searchlight | methodological | fig4A (ROI definition procedure) | The regions tested in the follow-up analyses were picked from significant clusters in the same data, which inflates significance. |
| 30 | trace-conditioning-hippocampus-engaged | scope | fig1 (methods) | The study uses trace conditioning, a gap between cue and shock, assuming from prior work that this engages the hippocampus. |
How it is defined
A model answers this layer, so the prompt is the layer. It is reproduced below from the committed file, and it is a declared input — editing it makes every run that used it stale.
The declaration names this path and the repository does not have it. An input that does not exist hashes to nothing, so it cannot make a run stale — the layer is declared to depend on something it is not in fact tracking.
The declaration names this path and the repository does not have it. An input that does not exist hashes to nothing, so it cannot make a run stale — the layer is declared to depend on something it is not in fact tracking.
Artifacts
Versions
From the run ledger. There is no changelog beside it to keep in step.
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v2 · 2026-09-12 · supplied:runs/bouyeure-2026-fear-rsa/plain-claim.answer.json
re-run after the runner changed; no cost recorded — these answers predate the field
python3 scripts/plain_claims.py bouyeure-2026-fear-rsa --answer runs/bouyeure-2026-fear-rsa/plain-claim.answer.json
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v1 · 2026-09-11 · supplied:runs/bouyeure-2026-fear-rsa/plain-claim.answer.json
first run: one plain sentence per claim, answered by Claude Opus 5 through --dump-prompt and fed back through --answer
python3 scripts/plain_claims.py bouyeure-2026-fear-rsa --answer runs/bouyeure-2026-fear-rsa/plain-claim.answer.json
This layer across the corpus
Across the corpus
10 stale·a paper links to its own cell, where this layer's output for it is rendered
| Paper | State | Version | Last run | Output | Cell |
|---|---|---|---|---|---|
| A three-dimensional immunofluorescence atlas of the …re-run after the runner changed; no cost recorded — these answers predate the field | stale | v2 | 2026-09-12 | artiushin-2026-spider-atlas.json | json |
| Distinct representational properties of cues and con…re-run after the runner changed; no cost recorded — these answers predate the field | stale | v2 | 2026-09-12 | bouyeure-2026-fear-rsa.json | json |
| Computational modelling identifies key determinants …re-run after the runner changed; no cost recorded — these answers predate the field | stale | v2 | 2026-09-12 | ejdrup-2026-dopamine.json | json |
| Contributions of insula and superior temporal sulcus…re-run after the runner changed | stale | v6 | 2026-09-12 | gadeke-2026-guilt-insula.json | json |
| Spatially targeted inhibitory rhythms differentially…re-run after the runner changed | stale | v3 | 2026-09-12 | headley-2026-inhibitory-rhythms.json | json |
| Feedback of peripheral saccade targets to early fove…re-run after the runner changed; one wording added for the promoted claim | stale | v2 | 2026-09-12 | kammer-2026-foveal-feedback.json | json |
| iGABASnFR2 is an improved genetically encoded protei…re-run after the runner changed; no cost recorded — these answers predate the field | stale | v3 | 2026-09-12 | kolb-2026-igabasnfr2.json | json |
| A deep learning pipeline for mapping in situ network…re-run after the runner changed; no cost recorded — these answers predate the field | stale | v2 | 2026-09-12 | rozak-2026-neurovascular-dl.json | json |
| Self-association enhances early attentional selectio…re-run after the runner changed; no cost recorded — these answers predate the field | stale | v2 | 2026-09-12 | scheller-2026-self-prioritization.json | json |
| Impaired excitability of fast-spiking neurons in a n…re-run after the runner changed; no cost recorded — these answers predate the field | stale | v2 | 2026-09-12 | wengert-2026-kcnc1.json | json |
Inputs and outputs
- Reads, besides its dependencies
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- scripts/plain_claims.py · declared, and not in the repository — it hashes to nothing, so it cannot make a run stale
- extract/prompts/plain-claim.md · declared, and not in the repository — it hashes to nothing, so it cannot make a run stale
- Produces
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- site/src/data/plain-claims/{paper}.json
One per paper — the table above links each one that exists.
- Views
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- list — rendered above, over the 17 claims in the artifact
- table — rendered above, over the 17 claims in the artifact
Running it
The command comes from the declaration, so this text and what actually runs cannot
diverge. pipeline.py run also runs the unmet dependencies first.
python3 scripts/pipeline.py run <paper> plain-claim
Underneath, that runs python3 scripts/plain_claims.py {paper} --answer runs/{paper}/plain-claim.answer.json.