Coverage adjudication

stale · v2 provisional awaiting approval

Of the spans the matcher could not resolve, which are real gaps?

for A three-dimensional immunofluorescence atlas of the brain of the hackled-orb weaver spider, Uloborus diversus · this layer across all papers · json

Provisional

This layer needs a corpus-scope decision that has not been ruled on yet, so what it produces would change if the decision changed. It waits on claim-format, relation-vocab.

Awaiting approval

Waiting for approval. That is a statement about the record, not about whether anyone has read this: people read the corpus without stamping what they read, and only a stamp leaves a trace. Approval is an operation on a version, not a step of its own — it is recorded against the version it was granted to, so running this layer again does not carry it forward.

Out of date

These inputs changed after this ran:

coverage/artiushin-2026-spider-atlas.json

What it produced121 spans

Read from mappings/artiushin-2026-spider-atlas.json · 27 KB. adjudicated 2026-09-11by supplied:runs/artiushin-2026-spider-atlas/adjudication.answer.json

#	uid	verdict	claim	why	sha	tree	claim_sha
1	results-002	gap	—	The division of the synganglion into subesophageal and supraesophageal masses is asserted here but no claim in the tree states the gross organisation of the U. diversus CNS.	95908fe7	265acc29	—
2	results-004	gap	—	That somata sit superficially while the interior is neuropil is an anatomical assertion no claim in the tree makes.	37eb8e0a	265acc29	—
3	results-006	not-an-assertion	—	This only says which rendering and which viewing angles the panel shows, not what was found in them.	22f39df8	—	—
4	results-007	not-an-assertion	—	A channel-and-view key for the rendering (synapsin green, DAPI blue), asserting nothing about the brain.	b5864ecb	—	—
5	results-025	not-an-assertion	—	Pure graphical encoding: which volume the rendering came from and the order of the three views.	e16efe06	—	—
6	results-026	not-an-assertion	—	A colour key listing which antiserum each subpanel carries, not a statement of what the staining revealed.	4489f285	—	—
7	results-027	gap	—	Beyond the perimeter and projection notes, this records that the dopaminergic volume is not registered to the standard atlas — a methodological limitation no claim in the tree captures.	aa21930e	265acc29	—
8	results-034	covered	leg-neuropil-serotonin-bilateral-innervation	The claim contrasts the serotonergic halves with exactly this uniform, mesh-like dopaminergic innervation of the leg neuropils.	4695a8b5	—	746a3a5d
9	results-041	gap	—	No claim in the tree records CCAP immunoreactivity or its posterior bias within the leg neuropils.	83d71799	265acc29	—
10	results-042	gap	—	FMRFamide immunoreactivity in the leg neuropils is reported here but appears in no claim.	80948cfb	265acc29	—
11	results-043	gap	—	The position of the opisthosomal neuropil at the posterior-dorsal extent of the subesophageal mass is asserted here and in no claim.	ed0f15d9	265acc29	—
12	results-045	gap	—	The ladder-like and longitudinal tract architecture seen in the synapsin channel itself is unclaimed; the tree's ladder claim is specifically about TDC2.	acdab1c1	265acc29	—
13	results-046	gap	—	The lateral divergence of posteriorly travelling tracts around the neuropil circumference is described here without a corresponding claim.	bb11d68d	265acc29	—
14	results-047	not-an-assertion	—	A bare figure title.	ea3918eb	—	—
15	results-048	not-an-assertion	—	Graphical encoding: the source volume and the order of views in the rendering.	7f0c023b	—	—
16	results-049	not-an-assertion	—	A channel-and-colour key for the subpanels, not a finding.	83ed314d	—	—
17	results-052	covered	opisthosomal-neuropil-tdc2-perimeter-ladder	The claim states that TDC2 longitudinal and lateral projections form a ladder-like structure in the opisthosomal neuropil, which is what this panel description reports.	d4b077bd	—	8ad92e3e
18	results-054	not-an-assertion	—	A panel label naming the channel and its colour, with no described pattern.	a393a350	—	—
19	results-056	not-an-assertion	—	A bare video title.	ec4c962e	—	—
20	results-057	not-an-assertion	—	A bare video title.	d0002346	—	—
21	results-058	not-an-assertion	—	A bare video title.	390f395b	—	—
22	results-061	covered	opisthosomal-neuropil-tdc2-perimeter-ladder	The claim states that this perimeter-tract pattern is also partially revealed by proctolin and dopaminergic innervation, which is the finding reported here.	613f75e4	—	8ad92e3e
23	results-065	covered	opisthosomal-neuropil-tdc2-perimeter-ladder	This is the ladder-like arrangement of longitudinal and lateral projections, best seen with TDC2 and TH, that the claim asserts.	737e405e	—	8ad92e3e
24	results-067	gap	—	FMRFamide innervation of the opisthosomal neuromere, and its comparative uniformity, is reported here but claimed nowhere.	f54e80a3	265acc29	—
25	results-068	gap	—	The position and identification of the pedipalpal neuropil is an anatomical assertion; the tree's pedipalpal claim covers only which transmitters dominate it.	d1c75cda	265acc29	—
26	results-074	not-an-assertion	—	A bare figure title.	fd11171e	—	—
27	results-075	not-an-assertion	—	Graphical encoding: the source volume and the arrangement of views.	eea0bdc4	—	—
28	results-076	not-an-assertion	—	A key giving the optical plane, the dashed boundary convention, and the colour of each channel.	79210621	—	—
29	results-078	not-an-assertion	—	A key giving the optical plane, the crop, the brace convention, and which channels appear above and below.	5d52e51a	—	—
30	results-080	not-an-assertion	—	Graphical encoding: the source volume and the arrangement of views.	82ba3c16	—	—
31	results-081	not-an-assertion	—	A channel-and-colour key for the cheliceral cross-section subpanels.	c4d3fd96	—	—
32	results-084	not-an-assertion	—	A bare video title.	2740900d	—	—
33	results-085	not-an-assertion	—	A bare video title.	00647f23	—	—
34	results-086	not-an-assertion	—	A bare video title.	0f85c99c	—	—
35	results-087	not-an-assertion	—	A bare video title.	d0399d0f	—	—
36	results-088	not-an-assertion	—	A bare video title.	ed681d64	—	—
37	results-089	not-an-assertion	—	A bare video title.	e5877cfa	—	—
38	results-091	gap	—	The observation of a paired midline synapsin-dense entity near the Blumenthal neuropil position, and the stated uncertainty about its identity, is carried by no claim in the tree.	2eca642f	265acc29	—
39	results-093	gap	—	The dorsal transition of this immunoreactivity into laterally moving tracts is reported here and claimed nowhere.	c058f04e	265acc29	—
40	results-095	gap	—	The course and position of the cheliceral neuropil is asserted here; the tree's cheliceral claim addresses only its transmitter content.	91e8dedd	265acc29	—
41	results-103	gap	—	The anterior/posterior subdivision of the ventral supraesophageal mass by differing synapsin density is an unclaimed finding.	1b71232f	265acc29	—
42	results-106	not-an-assertion	—	A bare figure title.	8a29980e	—	—
43	results-107	covered	opisthosomal-neuropil-tdc2-perimeter-ladder	The arrow-marked finding here — TDC2 tracks along the opisthosomal perimeter, supplied anteriorly — is what the claim asserts.	725a3777	—	8ad92e3e
44	results-110	gap	—	A proctolin-positive bridging structure at the posterior end of the ventral supraesophageal is reported here and appears in no claim.	4f6fbb5c	265acc29	—
45	results-113	gap	—	Prominent cholinergic immunoreactivity in the protocerebral tract is unclaimed; the tree's cholinergic layering claim concerns the protocerebral bridge, a different structure.	13a1ed2c	265acc29	—
46	results-117	not-an-assertion	—	A bare video title.	7e367d76	—	—
47	results-118	not-an-assertion	—	A bare video title.	53ac5eca	—	—
48	results-119	gap	—	The identification of the stomodeal bridge in U. diversus is an anatomical assertion no claim in the tree carries.	b43e767d	265acc29	—
49	results-120	gap	—	A posterior bridge structure with flanking undifferentiated synaptic density is reported here and claimed nowhere.	3aae5876	265acc29	—
50	results-121	gap	—	The protocerebral tract's twin dense nodes and the distribution of 5-HT across the posterior bridging area versus the stalk regions are unclaimed findings.	cacef290	265acc29	—
51	results-122	gap	—	TDC2 prominence in the stomodeal bridge and the two lateral bands with no synapsin counterpart are reported here and appear in no claim.	26f07810	265acc29	—
52	results-124	gap	—	Central TDC2 concentrations anterior and lateral to the protocerebral tracts are unclaimed.	f945bd71	265acc29	—
53	results-125	gap	—	Allatostatin A immunoreactivity beside the esophagus and its thin representation in the posterior commissure is carried by no claim.	4cc884db	265acc29	—
54	results-127	gap	—	The oxbow-shaped AstA innervation of the posterior midline-adjacent region is an unclaimed finding.	904b7a10	265acc29	—
55	results-132	gap	—	Central proctolin immunoreactivity medial to the ascending protocerebral tract is reported here and claimed nowhere.	7ffbb18b	265acc29	—
56	results-133	gap	—	Diffuse cholinergic signal in the stalk regions and the unique ChAT co-staining of the posterior protocerebral tract is unclaimed.	4ac2419e	265acc29	—
57	results-134	covered	hagstone-neuropil-serotonin-defined	The claim introduces the hagstone neuropil as exactly this centrally located, midline-adjacent paired structure of the supraesophageal ganglion.	a1cfebe0	—	114370b5
58	results-135	gap	—	The kidney-bean shape and the central synapsin-negative void, with its candidate explanations, is a finding no claim records.	eea33496	265acc29	—
59	results-136	not-an-assertion	—	A bare figure title.	f4e9ccbd	—	—
60	results-137	not-an-assertion	—	Graphical encoding: the source volume and the order of views.	195114ea	—	—
61	results-138	covered	hagstone-neuropil-serotonin-defined	The braced feature described here is the distinctive circular serotonergic tract pattern around the supraesophageal midline that the claim asserts.	2835abde	—	114370b5
62	results-139	not-an-assertion	—	A plane number and the dashed-perimeter convention, with no finding stated.	3d08b735	—	—
63	results-141	not-an-assertion	—	A plane number and the dashed-perimeter convention, with no finding stated.	000f2d1f	—	—
64	results-145	not-an-assertion	—	A bare video title.	e53e640e	—	—
65	results-146	not-an-assertion	—	A bare video title.	5bb50921	—	—
66	results-147	not-an-assertion	—	A bare video title.	41dc0ec1	—	—
67	results-150	gap	—	The medial bending of the semi-circular tracts and their dorsal fusion is a trajectory detail the claim naming the circular serotonergic tract does not assert.	4600144b	265acc29	—
68	results-151	covered	hagstone-neuropil-serotonin-defined	The claim states that the hagstone neuropil is essentially completely filled with serotonergic immunoreactivity matching its synapsin outline.	9749b6ee	—	114370b5
69	results-152	gap	—	The umbrella-like posterior band of serotonergic varicosities with midline fiber tracts is a distinct feature no claim records.	db2b92f6	265acc29	—
70	results-154	gap	—	TDC2 innervation of the umbrella-like posterior region and its sparse puncta inside the hagstone neuropil is unclaimed.	c32099d4	265acc29	—
71	results-165	not-an-assertion	—	Graphical encoding: which volume the optical sections come from and their ventral-to-dorsal ordering.	1aa4f447	—	—
72	results-167	covered	mushroom-bodies-present-asta-exclusive	The claim asserts that the mushroom bodies retain the complete haft-body-head form with the midline-spanning connecting bridge shown here.	e037d9c1	—	d11c60af
73	results-169	covered	mushroom-bodies-present-asta-exclusive	The presence of the mushroom body hafts shown in this plane is part of the complete haft-body-head form the claim asserts.	1582b947	—	d11c60af
74	results-171	gap	—	The tripart tract entering the mushroom body head and fusing with the descending tract is a structural finding no claim records.	2aeb0a91	265acc29	—
75	results-177	gap	—	That the bridge is only modestly synapsin-immunoreactive and its thickness is better seen with βTubulin3 is an unclaimed observation.	8666dbff	265acc29	—
76	results-182	gap	—	Posterior innervation of the mushroom body hafts is reported here and appears in no claim.	1e78f460	265acc29	—
77	results-183	gap	—	The two βTubulin3 tracts straddling the hafts as they descend from the somata layer are unclaimed.	f3562e13	265acc29	—
78	results-192	gap	—	The trident of tracts feeding the dorsal aspect of the mushroom body head is a structural finding no claim carries.	5fd73475	265acc29	—
79	results-201	gap	—	The weak synapsin but clear HRP labelling of the optic neuropils is an unclaimed methodological and anatomical finding.	b1f22c7a	265acc29	—
80	results-202	not-an-assertion	—	A bare figure title.	27082d1f	—	—
81	results-203	not-an-assertion	—	A colour key and an arrow convention for the panel.	d5181f57	—	—
82	results-204	not-an-assertion	—	Graphical encoding: what the rendering contains and which region it covers.	b808c639	—	—
83	results-207	gap	—	The larger secondary visual pathway and its anteriodorsal departure from the mushroom body heads is reported here and claimed nowhere.	18a89b20	265acc29	—
84	results-208	not-an-assertion	—	Narration pointing at where a continuity already stated elsewhere can be seen, rather than a result of its own.	290aa943	—	—
85	results-209	gap	—	The diminutive, bulbous primary visual pathway emerging at the dorsal-most brain is an unclaimed finding.	6f811d71	265acc29	—
86	results-217	covered	tonsillar-neuropil-novel-structure	This is the identification and naming of the previously undocumented tonsillar neuropil that the claim asserts.	0369c03b	—	155cb123
87	results-218	not-an-assertion	—	A bare figure title.	72e06dab	—	—
88	results-219	not-an-assertion	—	Graphical encoding: the source volume and the order of views.	7b6f8524	—	—
89	results-220	not-an-assertion	—	A description of the section orientation and the colour of each channel.	3be8623b	—	—
90	results-222	not-an-assertion	—	A key giving the two z-planes and the colour of each antiserum subpanel.	a666d330	—	—
91	results-224	not-an-assertion	—	A bare video title.	fa3b7f11	—	—
92	results-225	not-an-assertion	—	A bare video title.	9d36ea58	—	—
93	results-226	not-an-assertion	—	A bare video title.	49377dfc	—	—
94	results-228	gap	—	The tubulin-labelled tract bifurcating the structure below the bridge is a finding no claim about the tonsillar neuropil records.	0332c116	265acc29	—
95	results-229	covered	tonsillar-neuropil-novel-structure	The claim rests the identification of this neuropil on precisely this immunostaining profile whose signal is circumscribed by the structure's boundaries.	bcda0a67	—	155cb123
96	results-236	gap	—	The position of the protocerebral bridge as the dorsal-most interior neuropil below the somata cap is not asserted by any claim.	bbab3918	265acc29	—
97	results-237	not-an-assertion	—	A bare figure title.	ad41aca3	—	—
98	results-238	not-an-assertion	—	Graphical encoding: the source volume and the order of views.	b478efaf	—	—
99	results-239	not-an-assertion	—	A key giving the two z-planes and the colour of each antiserum subpanel.	9a96cbe4	—	—
100	results-242	not-an-assertion	—	A bare video title.	19f762cf	—	—
101	results-243	not-an-assertion	—	A bare video title.	61f9b623	—	—
102	results-244	not-an-assertion	—	A bare video title.	bad39160	—	—
103	results-253	gap	—	The dorsal protocerebral commissure and the tendency of protocerebral-bridge populations to innervate it is a structure and finding no claim records.	048ba594	265acc29	—
104	results-254	gap	—	TDC2 and proctolin being the strongest innervators of the dorsal protocerebral commissure is unclaimed; the tree's layering claim concerns the bridge itself, not the commissure.	525407a1	265acc29	—
105	results-256	gap	—	Allatostatin A following the same pattern is unclaimed — the protocerebral bridge claim names only GAD, TDC2, proctolin and ChAT.	fd69d908	265acc29	—
106	results-257	covered	protocerebral-bridge-layered-transmitter-architecture	The claim asserts that cholinergic immunoreactivity forms a distinct thin layer on both the anterior and posterior edges of the protocerebral bridge, which is the comparison drawn here.	4167909e	—	c15509e6
107	results-262	not-an-assertion	—	Graphical encoding: the views, the colour assigned to each arcuate body lobe, and the magenta envelope standing for the omitted lobe.	1075e7a2	—	—
108	results-268	gap	—	Pronounced fiber tracts passing through the arcuate body layers is a finding no claim records; the sublayer claim concerns transmitter innervation, not through-running tracts.	7c0db349	265acc29	—
109	results-269	covered	arcuate-body-four-sublayer-differential	The claim asserts that individual transmitter populations innervate distinct subsets of the arcuate body sublayers, which is the overlapping-but-distinct proctolin and TDC2 pattern shown here.	483d940e	—	13ff19ed
110	results-270	gap	—	The suggestion of columnar organisation from discrete AstA units is not asserted by any claim; the tree's arcuate body claim describes sublayers, not columns.	54b82ca1	265acc29	—
111	results-296	gap	—	Posterior cell layer neurons projecting anteriorly through the ventral arcuate layers is a connectivity finding no claim carries.	ba04aae0	265acc29	—
112	results-300	covered	arcuate-body-four-sublayer-differential	The claim asserts that individual transmitter populations innervate the arcuate body sublayers with non-uniform patterns, which is this contrast between columnar TDC2 and sparse proctolin in the same …	010629db	—	13ff19ed
113	results-302	gap	—	The inference of a columnar organisation obscured by staining density goes beyond the sublayer claim, which asserts layering rather than columns.	0f2ef51e	265acc29	—
114	captions-010	not-an-assertion	—	A bare figure title.	bf08340a	—	—
115	captions-019	not-an-assertion	—	A bare figure title.	c5843d3b	—	—
116	captions-029	not-an-assertion	—	A bare figure title.	dea32bc6	—	—
117	captions-040	not-an-assertion	—	A bare figure title.	7fe02140	—	—
118	captions-062	not-an-assertion	—	A bare figure title.	6523ef1d	—	—
119	captions-067	not-an-assertion	—	A bare figure title.	8df73e63	—	—
120	captions-073	not-an-assertion	—	A bare figure title.	79c6ae9c	—	—
121	captions-105	not-an-assertion	—	A compass-abbreviation key followed by a bare figure title.	578a063b	—	—

How it is defined

A model answers this layer, so the prompt is the layer. It is reproduced below from the committed file, and it is a declared input — editing it makes every run that used it stale.

extract/prompts/coverage-adjudicator.mdthe prompt it runs undernot in the repository

The declaration names this path and the repository does not have it. An input that does not exist hashes to nothing, so it cannot make a run stale — the layer is declared to depend on something it is not in fact tracking.

scripts/adjudicate.pythe script that runs itnot in the repository

Artifacts

mappings/artiushin-2026-spider-atlas.json

Versions

From the run ledger. There is no changelog beside it to keep in step.

v2 · 2026-09-11 · supplied:runs/artiushin-2026-spider-atlas/adjudication.answer.json

re-validated against the current tree; verdicts now carry the tree fingerprint

python3 scripts/adjudicate.py artiushin-2026-spider-atlas --answer runs/artiushin-2026-spider-atlas/adjudication.answer.json
v1 · 2026-09-11 · supplied:runs/artiushin-2026-spider-atlas/adjudication.answer.json

verdicts answered by Claude Opus 5 through --dump-prompt

python3 scripts/adjudicate.py artiushin-2026-spider-atlas --answer runs/artiushin-2026-spider-atlas/adjudication.answer.json

This layer across the corpus

Across the corpus

10 stale·a paper links to its own cell, where this layer's output for it is rendered

Paper	State	Version	Last run	Output	Cell
A three-dimensional immunofluorescence atlas of the …re-validated against the current tree; verdicts now carry the tree fingerprint	stale	v2	2026-09-11	artiushin-2026-spider-atlas.json	json
Distinct representational properties of cues and con…re-validated against the current tree; verdicts now carry the tree fingerprint	stale	v2	2026-09-11	bouyeure-2026-fear-rsa.json	json
Computational modelling identifies key determinants …re-validated against the current tree; verdicts now carry the tree fingerprint	stale	v2	2026-09-11	ejdrup-2026-dopamine.json	json
Contributions of insula and superior temporal sulcus…adjudication re-run post-stance (#96)	stale	v4	2026-09-12	gadeke-2026-guilt-insula.json	json
Spatially targeted inhibitory rhythms differentially…re-validated against the current tree; verdicts now carry the tree fingerprint	stale	v2	2026-09-11	headley-2026-inhibitory-rhythms.json	json
Feedback of peripheral saccade targets to early fove…re-validated against the current tree; verdicts now carry the tree fingerprint	stale	v2	2026-09-11	kammer-2026-foveal-feedback.json	json
iGABASnFR2 is an improved genetically encoded protei…ran via scripts/pipeline.py	stale	v3	2026-09-13	kolb-2026-igabasnfr2.json	json
A deep learning pipeline for mapping in situ network…re-validated against the current tree; verdicts now carry the tree fingerprint	stale	v2	2026-09-11	rozak-2026-neurovascular-dl.json	json
Self-association enhances early attentional selectio…re-validated against the current tree; verdicts now carry the tree fingerprint	stale	v2	2026-09-11	scheller-2026-self-prioritization.json	json
Impaired excitability of fast-spiking neurons in a n…ran via scripts/pipeline.py	stale	v3	2026-09-13	wengert-2026-kcnc1.json	json

Inputs and outputs

Reads, besides its dependencies: extract/prompts/coverage-adjudicator.md · declared, and not in the repository — it hashes to nothing, so it cannot make a run stale
scripts/adjudicate.py · declared, and not in the repository — it hashes to nothing, so it cannot make a run stale
Produces: mappings/{paper}.json

One per paper — the table above links each one that exists.
Views: table — rendered above, over the 121 spans in the artifact

Running it

The command comes from the declaration, so this text and what actually runs cannot diverge. pipeline.py run also runs the unmet dependencies first.

python3 scripts/pipeline.py run <paper> adjudication

Underneath, that runs python3 scripts/adjudicate.py {paper} --answer runs/{paper}/adjudication.answer.json.